InterMine Team
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/InterMineR |
| Branch: RELEASE_3_11 |
| Last Commit: 9cfcecd |
| Last Changed Date: 2020-04-27 15:10:08 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:53 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE InterMineR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 886/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| InterMineR 1.10.0 InterMine Team
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: InterMineR |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/InterMineR_1.10.0.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.10.0.zip && rm InterMineR_1.10.0.tar.gz InterMineR_1.10.0.zip |
| StartedAt: 2020-10-16 19:00:24 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:01:22 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 58.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/InterMineR_1.10.0.tar.gz && rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=InterMineR.buildbin-libdir InterMineR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL InterMineR_1.10.0.zip && rm InterMineR_1.10.0.tar.gz InterMineR_1.10.0.zip
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install for i386
* installing *source* package 'InterMineR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'InterMineR'
finding HTML links ... done
InterMineR-class html
InterMineR-methods html
InterMineR-package html
PL_DiabetesGenes html
PL_FlyTF_site_specific_TFs html
convertToGRanges html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:5: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:8: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:35: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:38: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:41: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:44: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:56: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:59: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGRanges.Rd:66: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
convertToGeneAnswers html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToGeneAnswers.Rd:8: file link 'GeneAnswers' in package 'GeneAnswers' does not exist and so has been treated as a topic
convertToRangedSummarizedExperiment html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:5: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:8: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:43: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:46: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:52: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:54: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:58: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:61: file link 'SummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpIZS1uA/R.INSTALL1fc46d4e837/InterMineR/man/convertToRangedSummarizedExperiment.Rd:69: file link 'RangedSummarizedExperiment' in package 'SummarizedExperiment' does not exist and so has been treated as a topic
doEnrichment html
getDatasets html
getGeneIds html
getModel html
getRelease html
getTemplateQuery html
getTemplates html
getVersion html
getWidgets html
initInterMine html
listDatasets html
listMines html
newQuery html
runQuery html
setConstraints html
setQuery html
simplifyResult html
summary html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'InterMineR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'InterMineR' as InterMineR_1.10.0.zip
* DONE (InterMineR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'InterMineR' successfully unpacked and MD5 sums checked