Back to Multiple platform build/check report for BioC 3.11
ABCDEFGH[I]JKLMNOPQRSTUVWXYZ

INSTALL report for IWTomics on tokay2

This page was generated on 2020-10-17 11:56:55 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE IWTomics PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 912/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IWTomics 1.12.0
Marzia A Cremona
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/IWTomics
Branch: RELEASE_3_11
Last Commit: 8af16ce
Last Changed Date: 2020-04-27 15:03:49 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: IWTomics
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IWTomics_1.12.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.12.0.zip && rm IWTomics_1.12.0.tar.gz IWTomics_1.12.0.zip
StartedAt: 2020-10-16 18:12:50 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:13:40 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 49.9 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IWTomics_1.12.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.12.0.zip && rm IWTomics_1.12.0.tar.gz IWTomics_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  682k  100  682k    0     0  6399k      0 --:--:-- --:--:-- --:--:-- 6752k

install for i386

* installing *source* package 'IWTomics' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'smooth' in package 'IWTomics'
** help
*** installing help indices
  converting help for package 'IWTomics'
    finding HTML links ... done
    ETn_example                             html  
    IWTomics-internal                       html  
    IWTomics-package                        html  
    IWTomicsData-class                      html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:60: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:135: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:168: file link 'read.delim' in package 'utils' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:308: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:309: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
    IWTomicsTest                            html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:61: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:64: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:79: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:80: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
    features_example                        html  
    plot-IWTomicsData                       html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/plot-IWTomicsData.Rd:96: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic
    plotSummary                             html  
    plotTest                                html  
    regionsFeatures_center                  html  
    regionsFeatures_scale                   html  
    regions_example                         html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/regions_example.Rd:19: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/regions_example.Rd:15: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
    smooth-IWTomicsData                     html  
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/smooth-IWTomicsData.Rd:78: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IWTomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IWTomics' as IWTomics_1.12.0.zip
* DONE (IWTomics)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'IWTomics' successfully unpacked and MD5 sums checked