Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:55 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE IWTomics PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 912/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IWTomics 1.12.0 Marzia A Cremona
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |
Package: IWTomics |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IWTomics_1.12.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.12.0.zip && rm IWTomics_1.12.0.tar.gz IWTomics_1.12.0.zip |
StartedAt: 2020-10-16 18:12:50 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:13:40 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 49.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/IWTomics_1.12.0.tar.gz && rm -rf IWTomics.buildbin-libdir && mkdir IWTomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IWTomics.buildbin-libdir IWTomics_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL IWTomics_1.12.0.zip && rm IWTomics_1.12.0.tar.gz IWTomics_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 682k 100 682k 0 0 6399k 0 --:--:-- --:--:-- --:--:-- 6752k install for i386 * installing *source* package 'IWTomics' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'smooth' in package 'IWTomics' ** help *** installing help indices converting help for package 'IWTomics' finding HTML links ... done ETn_example html IWTomics-internal html IWTomics-package html IWTomicsData-class html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:60: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:135: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:168: file link 'read.delim' in package 'utils' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:308: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsData-class.Rd:309: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic IWTomicsTest html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:61: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:64: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:79: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/IWTomicsTest.Rd:80: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic features_example html plot-IWTomicsData html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/plot-IWTomicsData.Rd:96: file link 'smooth' in package 'IWTomics' does not exist and so has been treated as a topic plotSummary html plotTest html regionsFeatures_center html regionsFeatures_scale html regions_example html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/regions_example.Rd:19: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/regions_example.Rd:15: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic smooth-IWTomicsData html Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpMhkbmY/R.INSTALL1c7831d30c9/IWTomics/man/smooth-IWTomicsData.Rd:78: file link 'plot' in package 'IWTomics' does not exist and so has been treated as a topic ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'IWTomics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'IWTomics' as IWTomics_1.12.0.zip * DONE (IWTomics) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'IWTomics' successfully unpacked and MD5 sums checked