Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:58 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE IMPCdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 871/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IMPCdata 1.24.0 Jeremy Mason
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: IMPCdata |
Version: 1.24.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings IMPCdata_1.24.0.tar.gz |
StartedAt: 2020-10-17 02:21:11 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 02:22:43 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 92.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IMPCdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings IMPCdata_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/IMPCdata.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IMPCdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IMPCdata’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IMPCdata’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed getPhenCenters 0.985 0.065 13.982 getPipelines 0.474 0.013 5.137 printProcedures 0.458 0.028 5.014 getProcedures 0.442 0.044 6.140 getStrains 0.405 0.016 5.025 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘IMPCdata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
name | user | system | elapsed | |
getAlleles | 0.512 | 0.020 | 4.081 | |
getGenes | 0.519 | 0.020 | 3.839 | |
getIMPCDataset | 0.076 | 0.012 | 1.114 | |
getIMPCTable | 0.300 | 0.024 | 2.593 | |
getName | 0.070 | 0.004 | 0.800 | |
getParameters | 0.422 | 0.012 | 3.982 | |
getPhenCenters | 0.985 | 0.065 | 13.982 | |
getPipelines | 0.474 | 0.013 | 5.137 | |
getProcedures | 0.442 | 0.044 | 6.140 | |
getStrains | 0.405 | 0.016 | 5.025 | |
getZygosities | 0.076 | 0.008 | 0.521 | |
printAlleles | 0.439 | 0.029 | 3.401 | |
printGenes | 0.475 | 0.023 | 3.504 | |
printParameters | 0.446 | 0.040 | 4.240 | |
printPhenCenters | 0.151 | 0.008 | 4.545 | |
printPipelines | 0.439 | 0.028 | 4.450 | |
printProcedures | 0.458 | 0.028 | 5.014 | |
printStrains | 0.397 | 0.024 | 3.985 | |