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CHECK report for HilbertVisGUI on tokay2

This page was generated on 2020-04-15 14:37:56 -0400 (Wed, 15 Apr 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE HilbertVisGUI PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 810/1868HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HilbertVisGUI 1.45.0
Simon Anders
Snapshot Date: 2020-04-14 16:45:23 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/HilbertVisGUI
Branch: master
Last Commit: 3e17f0a
Last Changed Date: 2019-12-18 02:34:30 -0400 (Wed, 18 Dec 2019)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ WARNINGS ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64 ...NOT SUPPORTED...

Summary

Package: HilbertVisGUI
Version: 1.45.0
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --no-vignettes --timings HilbertVisGUI_1.45.0.tar.gz
StartedAt: 2020-04-15 01:51:24 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 01:53:51 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 147.4 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: HilbertVisGUI.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --no-vignettes --timings HilbertVisGUI_1.45.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck'
* using R version 4.0.0 alpha (2020-03-31 r78116)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertVisGUI/DESCRIPTION' ... OK
* this is package 'HilbertVisGUI' version '1.45.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'HilbertVisGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hilbertDisplay: no visible global function definition for
  'colorRampPalette'
hilbertDisplay: no visible global function definition for 'col2rgb'
hilbertDisplay: no visible global function definition for 'median'
hilbertDisplayThreeChannel: no visible global function definition for
  'col2rgb'
Undefined global functions or variables:
  col2rgb colorRampPalette median
Consider adding
  importFrom("grDevices", "col2rgb", "colorRampPalette")
  importFrom("stats", "median")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... WARNING
Non-portable flags in variable 'PKG_CPPFLAGS':
  -mms-bitfields
Non-portable flags in variable 'PKG_CFLAGS':
  -mms-bitfields
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
hilbertDisplay 0.29   1.17    9.67
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00check.log'
for details.

Installation output

HilbertVisGUI.Rcheck/00install.out

* installing *source* package 'HilbertVisGUI' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/extsoft/include"  -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS   -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_env_prot.c -o R_env_prot.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c R_interface.cc -o R_interface.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
                 from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
                 from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
                 from display.h:7,
                 from R_interface.cc:8:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_CACHE_SUFFIX      ".cache-"FC_CACHE_VERSION
                              ^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_DIR_CACHE_FILE     "fonts.cache-"FC_CACHE_VERSION
                               ^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_USER_CACHE_FILE     ".fonts.cache-"FC_CACHE_VERSION
                                ^
In file included from C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/R.h:91:0,
                 from R_interface.cc:17:
C:/Users/BIOCBU~1/BBS-3~1.11-/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from R_interface.cc:13:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for( int i = 0; i < palette_steps->size(); i++ )
                      ^
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
    double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4;
           ^
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for( int i = 0; i < palette_steps->size(); i++ )
                      ^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:135:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if( INTEGER(data)[i] < val )
         ^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:196:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if( REAL(data)[i] < val )
         ^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c colorizers.cc -o colorizers.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
                 from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
                 from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
                 from colorizers.h:6,
                 from colorizers.cc:1:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_CACHE_SUFFIX      ".cache-"FC_CACHE_VERSION
                              ^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_DIR_CACHE_FILE     "fonts.cache-"FC_CACHE_VERSION
                               ^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_USER_CACHE_FILE     ".fonts.cache-"FC_CACHE_VERSION
                                ^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c display.cc -o display.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
                 from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
                 from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
                 from display.h:7,
                 from display.cc:1:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_CACHE_SUFFIX      ".cache-"FC_CACHE_VERSION
                              ^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_DIR_CACHE_FILE     "fonts.cache-"FC_CACHE_VERSION
                               ^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_USER_CACHE_FILE     ".fonts.cache-"FC_CACHE_VERSION
                                ^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c ruler.cc -o ruler.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
                 from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
                 from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
                 from ruler.h:4,
                 from ruler.cc:6:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_CACHE_SUFFIX      ".cache-"FC_CACHE_VERSION
                              ^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_DIR_CACHE_FILE     "fonts.cache-"FC_CACHE_VERSION
                               ^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_USER_CACHE_FILE     ".fonts.cache-"FC_CACHE_VERSION
                                ^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c window.cc -o window.o
In file included from C:/gtkmm64/include/cairo/cairo-ft.h:50:0,
                 from C:/gtkmm64/include/cairomm-1.0/cairomm/fontoptions.h:26,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm/screen.h:35,
                 from C:/gtkmm64/include/gdkmm-2.4/gdkmm.h:27,
                 from C:/gtkmm64/include/gtkmm-2.4/gtkmm.h:89,
                 from window.h:5,
                 from window.cc:4:
C:/gtkmm64/include/fontconfig/fontconfig.h:115:30: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_CACHE_SUFFIX      ".cache-"FC_CACHE_VERSION
                              ^
C:/gtkmm64/include/fontconfig/fontconfig.h:116:31: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_DIR_CACHE_FILE     "fonts.cache-"FC_CACHE_VERSION
                               ^
C:/gtkmm64/include/fontconfig/fontconfig.h:117:32: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
 #define FC_USER_CACHE_FILE     ".fonts.cache-"FC_CACHE_VERSION
                                ^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm64/lib -Lc:/devel/dist/win64/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
C:\Rtools\mingw_32\bin\nm.exe: C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/R_env_prot.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/R_interface.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/colorizers.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/display.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/ruler.o: File format not recognized
C:\Rtools\mingw_32\bin\nm.exe: C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/window.o: File format not recognized
Warning messages:
1: In system(sprintf("%s -Pg %s", shQuote(nm), shQuote(f)), intern = TRUE) :
  running command '"C:\Rtools\mingw_32\bin\nm.exe" -Pg "C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/R_env_prot.o"' had status 1
2: In system(sprintf("%s -Pg %s", shQuote(nm), shQuote(f)), intern = TRUE) :
  running command '"C:\Rtools\mingw_32\bin\nm.exe" -Pg "C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/R_interface.o"' had status 1
3: In system(sprintf("%s -Pg %s", shQuote(nm), shQuote(f)), intern = TRUE) :
  running command '"C:\Rtools\mingw_32\bin\nm.exe" -Pg "C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/colorizers.o"' had status 1
4: In system(sprintf("%s -Pg %s", shQuote(nm), shQuote(f)), intern = TRUE) :
  running command '"C:\Rtools\mingw_32\bin\nm.exe" -Pg "C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/display.o"' had status 1
5: In system(sprintf("%s -Pg %s", shQuote(nm), shQuote(f)), intern = TRUE) :
  running command '"C:\Rtools\mingw_32\bin\nm.exe" -Pg "C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/ruler.o"' had status 1
6: In system(sprintf("%s -Pg %s", shQuote(nm), shQuote(f)), intern = TRUE) :
  running command '"C:\Rtools\mingw_32\bin\nm.exe" -Pg "C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00_pkg_src/HilbertVisGUI/src/window.o"' had status 1
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/HilbertVisGUI.Rcheck/00LOCK-HILBER~1/00new/HilbertVisGUI/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HilbertVisGUI)

Tests output

Example timings

HilbertVisGUI.Rcheck/HilbertVisGUI-Ex.timings

nameusersystemelapsed
hilbertDisplay0.291.179.67