John Stansfield
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/HiCcompare |
| Branch: RELEASE_3_11 |
| Last Commit: aaf5c67 |
| Last Changed Date: 2020-04-27 15:09:03 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:49 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE HiCcompare PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 815/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HiCcompare 1.10.0 John Stansfield
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: HiCcompare |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HiCcompare_1.10.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.10.0.zip && rm HiCcompare_1.10.0.tar.gz HiCcompare_1.10.0.zip |
| StartedAt: 2020-10-16 18:34:57 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:36:10 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 72.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HiCcompare_1.10.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.10.0.zip && rm HiCcompare_1.10.0.tar.gz HiCcompare_1.10.0.zip
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install for i386
* installing *source* package 'HiCcompare' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'ceiling'
** help
*** installing help indices
converting help for package 'HiCcompare'
finding HTML links ... done
HMEC.chr10 html
HMEC.chr22 html
HiCcompare-package html
KRnorm html
MA_norm html
MD.plot1 html
MD.plot2 html
NHEK.chr10 html
NHEK.chr22 html
SCN html
brain_table html
centromere_locations html
cooler html
cooler2bedpe html
cooler2sparse html
create.hic.table html
filter_params html
full2sparse html
get_CNV html
hg19_blacklist html
hg38_blacklist html
hic_compare html
hic_diff html
hic_loess html
hic_simulate html
hicpro2bedpe html
hmec.IS html
make_InteractionSet html
manhattan_plot html
nhek.IS html
remove_centromere html
sim.other.methods html
sim_matrix html
sparse2full html
split_centromere html
total_sum html
visualize_pvals html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HiCcompare' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCcompare' as HiCcompare_1.10.0.zip
* DONE (HiCcompare)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'HiCcompare' successfully unpacked and MD5 sums checked