Michael Lawrence
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/HelloRanges |
| Branch: RELEASE_3_11 |
| Last Commit: 39dafc4 |
| Last Changed Date: 2020-04-27 15:02:58 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:49 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE HelloRanges PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 809/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HelloRanges 1.14.0 Michael Lawrence
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: HelloRanges |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HelloRanges_1.14.0.tar.gz && rm -rf HelloRanges.buildbin-libdir && mkdir HelloRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HelloRanges.buildbin-libdir HelloRanges_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HelloRanges_1.14.0.zip && rm HelloRanges_1.14.0.tar.gz HelloRanges_1.14.0.zip |
| StartedAt: 2020-10-16 19:23:41 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:26:08 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 147.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HelloRanges_1.14.0.tar.gz && rm -rf HelloRanges.buildbin-libdir && mkdir HelloRanges.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HelloRanges.buildbin-libdir HelloRanges_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HelloRanges_1.14.0.zip && rm HelloRanges_1.14.0.tar.gz HelloRanges_1.14.0.zip
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install for i386
* installing *source* package 'HelloRanges' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HelloRanges'
finding HTML links ... done
argparse html
bedtools_closest html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_closest.Rd:126: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_closest.Rd:150: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_closest.Rd:150: file link 'precede' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_closest.Rd:151: file link 'follow' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_closest.Rd:151: file link 'nearest' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_complement html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_complement.Rd:59: file link 'setdiff' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_complement.Rd:62: file link 'gaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_coverage html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_coverage.Rd:127: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_flank html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_flank.Rd:83: file link 'flank' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_genomecov html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_genomecov.Rd:112: file link 'coverage' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_getfasta html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_getfasta.Rd:72: file link 'import' in package 'rtracklayer' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_getfasta.Rd:76: file link 'readDNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
bedtools_groupby html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_groupby.Rd:77: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic
bedtools_intersect html
bedtools_jaccard html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_jaccard.Rd:97: file link 'intersect' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_jaccard.Rd:98: file link 'union' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_makewindows html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_makewindows.Rd:71: file link 'tile' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_makewindows.Rd:72: file link 'slidingWindows' in package 'IRanges' does not exist and so has been treated as a topic
bedtools_map html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_map.Rd:123: file link 'findOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_map.Rd:124: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_map.Rd:125: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic
bedtools_merge html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_merge.Rd:89: file link 'reduce' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_merge.Rd:91: file link 'aggregate' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_merge.Rd:111: file link 'reduce' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_multiinter html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_multiinter.Rd:10: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_multiinter.Rd:69: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_multiinter.Rd:87: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_nuc html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_nuc.Rd:69: file link 'alphabetFrequency' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_nuc.Rd:71: file link 'vcountPattern' in package 'Biostrings' does not exist and so has been treated as a topic
bedtools_shift html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_shift.Rd:76: file link 'shift' in package 'IRanges' does not exist and so has been treated as a topic
bedtools_slop html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_slop.Rd:83: file link 'resize' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_subtract html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_subtract.Rd:107: file link 'setdiff' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_subtract.Rd:118: file link 'subsetByOverlaps' in package 'GenomicRanges' does not exist and so has been treated as a topic
bedtools_unionbedg html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_unionbedg.Rd:10: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/bedtools_unionbedg.Rd:85: file link 'disjoin' in package 'GenomicRanges' does not exist and so has been treated as a topic
distmode html
pair html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpYL26qD/R.INSTALL2c5027075712/HelloRanges/man/pair.Rd:45: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HelloRanges' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HelloRanges' as HelloRanges_1.14.0.zip
* DONE (HelloRanges)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'HelloRanges' successfully unpacked and MD5 sums checked