HyungJun Cho
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/HEM |
| Branch: RELEASE_3_11 |
| Last Commit: c365963 |
| Last Changed Date: 2020-04-27 14:09:59 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:49 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE HEM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 811/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| HEM 1.60.0 HyungJun Cho
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: HEM |
| Version: 1.60.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HEM_1.60.0.tar.gz && rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HEM.buildbin-libdir HEM_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HEM_1.60.0.zip && rm HEM_1.60.0.tar.gz HEM_1.60.0.zip |
| StartedAt: 2020-10-16 16:52:23 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 16:53:18 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 55.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/HEM_1.60.0.tar.gz && rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HEM.buildbin-libdir HEM_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL HEM_1.60.0.zip && rm HEM_1.60.0.tar.gz HEM_1.60.0.zip
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install for i386
* installing *source* package 'HEM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i, j, k, m, n;
^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int i, j, k, l;
^
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/HEM.buildbin-libdir/00LOCK-HEM/00new/HEM/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HEM'
finding HTML links ... done
am.tran html
am.tran.half html
base.ASE.Olig html
base.PSE.Olig html
base.error.Olig html
base.error.Olig.quanOnly html
boot.base.ASE.Olig html
boot.base.PSE.Olig html
boot.base.error.Olig html
fixbound.predict.smooth.spline html
hem html
hem.eb.prior html
hem.fdr html
hem.null.no html
hem.null.one html
hem.null.two html
hem.preproc html
mubcp html
nonpar.error.Olig html
nonpar.no.error.Olig html
nonpar.rep.error.Olig html
par.error.Olig html
par.no.error.Olig html
par.rep.error.Olig html
pbrain html
permut html
quant.norm html
quant.normal html
quant.normal2 html
quant.normalize html
remove.sig.genes html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HEM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
int i, j, k, m, n;
^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
int i, j, k, l;
^
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/HEM.buildbin-libdir/HEM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HEM' as HEM_1.60.0.zip
* DONE (HEM)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'HEM' successfully unpacked and MD5 sums checked