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INSTALL report for GenomicTuples on tokay2

This page was generated on 2020-10-17 11:56:40 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE GenomicTuples PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 714/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicTuples 1.22.1
Peter Hickey
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/GenomicTuples
Branch: RELEASE_3_11
Last Commit: 7638c3a
Last Changed Date: 2020-05-21 01:28:24 -0400 (Thu, 21 May 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: GenomicTuples
Version: 1.22.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GenomicTuples_1.22.1.tar.gz && rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicTuples.buildbin-libdir GenomicTuples_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GenomicTuples_1.22.1.zip && rm GenomicTuples_1.22.1.tar.gz GenomicTuples_1.22.1.zip
StartedAt: 2020-10-16 18:19:07 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:20:31 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 83.7 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GenomicTuples_1.22.1.tar.gz && rm -rf GenomicTuples.buildbin-libdir && mkdir GenomicTuples.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicTuples.buildbin-libdir GenomicTuples_1.22.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GenomicTuples_1.22.1.zip && rm GenomicTuples_1.22.1.tar.gz GenomicTuples_1.22.1.zip
###
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install for i386

* installing *source* package 'GenomicTuples' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c IPD.cpp -o IPD.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c allTuplesSorted.cpp -o allTuplesSorted.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c pcompareGTuples.cpp -o pcompareGTuples.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/GenomicTuples.buildbin-libdir/00LOCK-GenomicTuples/00new/GenomicTuples/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicTuples'
    finding HTML links ... done
    GTuples-class                           html  
    finding level-2 HTML links ... done

    GTuples-comparison                      html  
    GTuplesList-class                       html  
    GenomicTuples-package                   html  
    dot-GT2DT                               html  
    dot-IPDCpp                              html  
    dot-allTuplesSortedCpp                  html  
    dot-findEqual.GTuples                   html  
    dot-matrixDiffWithRecycling             html  
    dot-pcompareGTuplesCpp                  html  
    dot-zero_range                          html  
    findOverlaps-methods                    html  
    illdefined-methods                      html  
    intra-tuple-methods                     html  
    nearest-methods                         html  
    tuples-squeezers                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicTuples' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c IPD.cpp -o IPD.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c allTuplesSorted.cpp -o allTuplesSorted.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -c pcompareGTuples.cpp -o pcompareGTuples.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GenomicTuples.dll tmp.def IPD.o RcppExports.o allTuplesSorted.o pcompareGTuples.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/GenomicTuples.buildbin-libdir/GenomicTuples/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicTuples' as GenomicTuples_1.22.1.zip
* DONE (GenomicTuples)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'GenomicTuples' successfully unpacked and MD5 sums checked