Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:44 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE GOSim PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 756/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOSim 1.26.0 Holger Froehlich
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: GOSim |
Version: 1.26.0 |
Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.26.0.tar.gz |
StartedAt: 2020-10-17 10:41:02 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 10:42:13 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 70.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOSim_1.26.0.zip |
PackageFileSize: 1.17 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GOSim.buildbin-libdir GOSim_1.26.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'GOSim' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" `C:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c OAWrapper.cpp -o OAWrapper.o Loading required package: Rcpp "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hungarian2.c -o hungarian2.o Loading required package: Rcpp C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR Loading required package: Rcpp installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/GOSim.buildbin-libdir/00LOCK-GOSim/00new/GOSim/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GOSim' finding HTML links ... done GOenrichment html IC html calc.diffusion.kernel html calcICs html evaluateClustering html filterGO html getAncestors html getChildren html getDisjCommAnc html getGOGraph html getGOInfo html getGeneFeatures html getGeneFeaturesPrototypes html getGeneSim html getGeneSimPrototypes html getMinimumSubsumer html getOffsprings html getParents html getTermSim html internal html selectPrototypes html setEnrichmentFactors html setEvidenceLevel html setOntology html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GOSim' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" `C:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c OAWrapper.cpp -o OAWrapper.o Loading required package: Rcpp "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c hungarian2.c -o hungarian2.o Loading required package: Rcpp C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o GOSim.dll tmp.def OAWrapper.o hungarian2.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR Loading required package: Rcpp installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/GOSim.buildbin-libdir/GOSim/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GOSim' as GOSim_1.26.0.zip * DONE (GOSim)