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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GIGSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings GIGSEA_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/GIGSEA.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GIGSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GIGSEA' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GIGSEA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
geneSet2Net                 23.75   3.83   27.64
geneSet2sparseMatrix        23.32   3.77   27.11
gmt2geneSet                 16.42   3.73   20.17
permutationMultipleLmMatrix  5.58   0.19    5.76
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
geneSet2Net          14.95   3.32   18.31
geneSet2sparseMatrix 14.84   3.21   18.07
gmt2geneSet           8.76   2.87   11.66
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/GIGSEA_1.6.0.tar.gz && rm -rf GIGSEA.buildbin-libdir && mkdir GIGSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GIGSEA.buildbin-libdir GIGSEA_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL GIGSEA_1.6.0.zip && rm GIGSEA_1.6.0.tar.gz GIGSEA_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1091k  100 1091k    0     0  15.2M      0 --:--:-- --:--:-- --:--:-- 16.6M

install for i386

* installing *source* package 'GIGSEA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GIGSEA'
    finding HTML links ... done
    MSigDB.KEGG.Pathway                     html  
    MSigDB.TF                               html  
    MSigDB.miRNA                            html  
    TargetScan.miRNA                        html  
    dataFrame2geneSet                       html  
    geneSet2Net                             html  
    geneSet2sparseMatrix                    html  
    gmt2geneSet                             html  
    heart.metaXcan                          html  
    matrixPval                              html  
    orderedIntersect                        html  
    permutationMultipleLm                   html  
    permutationMultipleLmMatrix             html  
    permutationSimpleLm                     html  
    permutationSimpleLmMatrix               html  
    runGIGSEA                               html  
    weightedGSEA                            html  
    weightedMultipleLm                      html  
    weightedPearsonCorr                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GIGSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GIGSEA' as GIGSEA_1.6.0.zip
* DONE (GIGSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'GIGSEA' successfully unpacked and MD5 sums checked