Sofie Van Gassen
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/FlowSOM |
| Branch: RELEASE_3_11 |
| Last Commit: 13887e0 |
| Last Changed Date: 2020-04-27 14:45:50 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:35 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE FlowSOM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 623/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FlowSOM 1.20.0 Sofie Van Gassen
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: FlowSOM |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FlowSOM_1.20.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FlowSOM_1.20.0.zip && rm FlowSOM_1.20.0.tar.gz FlowSOM_1.20.0.zip |
| StartedAt: 2020-10-16 18:50:29 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:51:22 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 53.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FlowSOM_1.20.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FlowSOM_1.20.0.zip && rm FlowSOM_1.20.0.tar.gz FlowSOM_1.20.0.zip
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100 1158k 100 1158k 0 0 14.3M 0 --:--:-- --:--:-- --:--:-- 15.4M
install for i386
* installing *source* package 'FlowSOM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c som.c -o som.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/FlowSOM.buildbin-libdir/00LOCK-FlowSOM/00new/FlowSOM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'FlowSOM'
finding HTML links ... done
AddFlowFrame html
AggregateFlowFrames html
BuildMST html
BuildSOM html
CountGroups html
Dist.MST html
FMeasure html
FlowSOM html
FlowSOMSubset html
GetCVs html
GetClusters html
GetFlowJoLabels html
finding level-2 HTML links ... done
GetMFIs html
GetMetaclusters html
Initialize_KWSP html
Initialize_PCA html
MapDataToCodes html
MetaClustering html
MetaclusterCVs html
MetaclusterMFIs html
NewData html
PlotCenters html
PlotClusters2D html
PlotGroups html
PlotLabels html
PlotMarker html
PlotNode html
PlotNumbers html
PlotOverview2D html
PlotPies html
PlotSD html
PlotStars html
PlotVariable html
Purity html
QueryStarPlot html
ReadInput html
SOM html
SaveClustersToFCS html
TestOutliers html
UpdateNodeSize html
computeBackgroundColor html
get_channels html
get_markers html
metaClustering_consensus html
plotStarLegend html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FlowSOM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c som.c -o som.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FlowSOM' as FlowSOM_1.20.0.zip
* DONE (FlowSOM)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'FlowSOM' successfully unpacked and MD5 sums checked