Johannes Rainer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/FamAgg |
| Branch: RELEASE_3_11 |
| Last Commit: 6db3614 |
| Last Changed Date: 2020-04-27 14:52:58 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:33 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE FamAgg PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 581/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FamAgg 1.16.0 Johannes Rainer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: FamAgg |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FamAgg_1.16.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.16.0.zip && rm FamAgg_1.16.0.tar.gz FamAgg_1.16.0.zip |
| StartedAt: 2020-10-16 17:49:07 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:50:24 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 76.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FamAgg_1.16.0.tar.gz && rm -rf FamAgg.buildbin-libdir && mkdir FamAgg.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FamAgg.buildbin-libdir FamAgg_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FamAgg_1.16.0.zip && rm FamAgg_1.16.0.tar.gz FamAgg_1.16.0.zip
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install for i386
* installing *source* package 'FamAgg' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'pedigree' in package 'FamAgg'
in method for 'countGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'countGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigree"': no definition for class "pedigree"
in method for 'estimateGenerations' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'findFounders' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'generationsFrom' with signature '"pedigree"': no definition for class "pedigree"
in method for 'generationsFrom' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAncestors' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getChildren' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getChildren' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getCommonAncestor' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getMissingMate' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSiblings' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSiblings' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getAll' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getAll' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getExternalMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getExternalMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getGenerationSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getGenerationSexMatched' with signature '"pedigree"': no definition for class "pedigree"
in method for 'getSexMatched' with signature '"pedigreeList"': no definition for class "pedigreeList"
in method for 'getSexMatched' with signature '"pedigree"': no definition for class "pedigree"
** help
*** installing help indices
converting help for package 'FamAgg'
finding HTML links ... done
FABinTestResults html
FAData-analysis html
FAData html
FAGenIndexResults html
FAIncidenceRateResults html
FAKinGroupResults html
FAKinSumResults html
FAProbResults html
FAStdIncidenceRateResults html
Pedigree-utils html
defineControls html
plotting-functions html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FamAgg' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FamAgg' as FamAgg_1.16.0.zip
* DONE (FamAgg)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'FamAgg' successfully unpacked and MD5 sums checked