| Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:34 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE FEM PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 593/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Zhen Yang
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | ERROR | |||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | ERROR | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK |
| Package: FEM |
| Version: 3.16.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FEM_3.16.0.tar.gz && rm -rf FEM.buildbin-libdir && mkdir FEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FEM.buildbin-libdir FEM_3.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FEM_3.16.0.zip && rm FEM_3.16.0.tar.gz FEM_3.16.0.zip |
| StartedAt: 2020-10-16 17:57:10 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:58:09 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 58.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/FEM_3.16.0.tar.gz && rm -rf FEM.buildbin-libdir && mkdir FEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FEM.buildbin-libdir FEM_3.16.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL FEM_3.16.0.zip && rm FEM_3.16.0.tar.gz FEM_3.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 13.4M 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 13.4M 100 13.4M 0 0 38.3M 0 --:--:-- --:--:-- --:--:-- 39.1M
install for i386
* installing *source* package 'FEM' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'igraph::path' by 'BiocGenerics::path' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
Note: break used in wrong context: no loop is visible
** help
*** installing help indices
converting help for package 'FEM'
finding HTML links ... done
DoEpiMod html
DoExpMod html
DoFEMbi html
DoIntEpi450k html
DoIntExp html
DoIntFEM450k html
FEM-package html
FemModShow html
GenStatM html
GenStatMsp html
GenStatR html
Realdata html
Toydata html
probe450kfemanno html
probeEPICfemanno html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'igraph::path' by 'BiocGenerics::path' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
Warning: Package 'FEM' is deprecated and will be removed from Bioconductor
version 3.12
** testing if installed package can be loaded from final location
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'igraph::path' by 'BiocGenerics::path' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
Warning: Package 'FEM' is deprecated and will be removed from Bioconductor
version 3.12
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FEM' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::edges' by 'graph::edges' when loading 'FEM'
Warning: replacing previous import 'igraph::intersection' by 'graph::intersection' when loading 'FEM'
Warning: replacing previous import 'igraph::degree' by 'graph::degree' when loading 'FEM'
Warning: replacing previous import 'igraph::union' by 'graph::union' when loading 'FEM'
Warning: replacing previous import 'limma::plotMA' by 'BiocGenerics::plotMA' when loading 'FEM'
Warning: replacing previous import 'igraph::path' by 'BiocGenerics::path' when loading 'FEM'
Warning: replacing previous import 'Matrix::which' by 'BiocGenerics::which' when loading 'FEM'
Warning: replacing previous import 'igraph::normalize' by 'BiocGenerics::normalize' when loading 'FEM'
Warning: Package 'FEM' is deprecated and will be removed from Bioconductor
version 3.12
* MD5 sums
packaged installation of 'FEM' as FEM_3.16.0.zip
* DONE (FEM)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'FEM' successfully unpacked and MD5 sums checked