Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:29 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE DSS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 508/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DSS 2.36.0 Hao Wu
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: DSS |
Version: 2.36.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DSS_2.36.0.tar.gz && rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DSS_2.36.0.zip && rm DSS_2.36.0.tar.gz DSS_2.36.0.zip |
StartedAt: 2020-10-16 18:54:40 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 18:55:56 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 75.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/DSS_2.36.0.tar.gz && rm -rf DSS.buildbin-libdir && mkdir DSS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DSS.buildbin-libdir DSS_2.36.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL DSS_2.36.0.zip && rm DSS_2.36.0.tar.gz DSS_2.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 1151k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1151k 100 1151k 0 0 15.8M 0 --:--:-- --:--:-- --:--:-- 17.0M install for i386 * installing *source* package 'DSS' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compute_var_smooth.c -o compute_var_smooth.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c filter.c -o filter.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nitem.c -o nitem.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DSS.buildbin-libdir/00LOCK-DSS/00new/DSS/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DSS' finding HTML links ... done DMLfit.multiFactor html DMLtest html DMLtest.multiFactor html DSS-package html DSS.DE html RRBS html SeqCountSet-class html finding level-2 HTML links ... done callDML html callDMR html design html dispersion html estDispersion html estNormFactors html makeBSseqData html normalizationFactor html seqData html showOneDMR html waldTest html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DSS' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c compute_var_smooth.c -o compute_var_smooth.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c filter.c -o filter.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c nitem.c -o nitem.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DSS.dll tmp.def compute_var_smooth.o filter.o nitem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/DSS.buildbin-libdir/DSS/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DSS' as DSS_2.36.0.zip * DONE (DSS) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'DSS' successfully unpacked and MD5 sums checked