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BUILD report for DEDS on machv2

This page was generated on 2020-10-17 11:58:21 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE DEDS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 438/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEDS 1.62.0
Yuanyuan Xiao
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/DEDS
Branch: RELEASE_3_11
Last Commit: 96c20a5
Last Changed Date: 2020-04-27 14:10:29 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: DEDS
Version: 1.62.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEDS
StartedAt: 2020-10-16 18:36:03 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:36:22 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 19.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEDS
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* checking for file ‘DEDS/DESCRIPTION’ ... OK
* preparing ‘DEDS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEDS.rnw’ using Sweave
Warning: Package 'DEDS' is deprecated and will be removed from Bioconductor
  version 3.12

Error: processing vignette 'DEDS.rnw' failed with diagnostics:
 chunk 12 (label = pairsApoA1) 
Error in as.data.frame.default(x) : 
  cannot coerce class ‘"DEDS"’ to a data.frame

--- failed re-building ‘DEDS.rnw’

SUMMARY: processing the following file failed:
  ‘DEDS.rnw’

Error: Vignette re-building failed.
Execution halted