Back to Multiple platform build/check report for BioC 3.11
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

BUILD report for DEDS on celaya2

This page was generated on 2020-01-16 13:29:21 -0500 (Thu, 16 Jan 2020).

Package 422/1818HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEDS 1.61.1
Yuanyuan Xiao
Snapshot Date: 2020-01-15 16:46:30 -0500 (Wed, 15 Jan 2020)
URL: https://git.bioconductor.org/packages/DEDS
Branch: master
Last Commit: dfaccbe
Last Changed Date: 2020-01-06 11:16:30 -0500 (Mon, 06 Jan 2020)
malbec2 Linux (Ubuntu 18.04.3 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: DEDS
Version: 1.61.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEDS
StartedAt: 2020-01-15 19:52:28 -0500 (Wed, 15 Jan 2020)
EndedAt: 2020-01-15 19:53:04 -0500 (Wed, 15 Jan 2020)
EllapsedTime: 35.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DEDS
###
##############################################################################
##############################################################################


* checking for file ‘DEDS/DESCRIPTION’ ... OK
* preparing ‘DEDS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DEDS.rnw’ using Sweave
Warning: Package 'DEDS' is deprecated and will be removed from Bioconductor
  version 3.12

Error: processing vignette 'DEDS.rnw' failed with diagnostics:
 chunk 12 (label = pairsApoA1) 
Error in as.data.frame.default(x) : 
  cannot coerce class ‘"DEDS"’ to a data.frame

--- failed re-building ‘DEDS.rnw’

SUMMARY: processing the following file failed:
  ‘DEDS.rnw’

Error: Vignette re-building failed.
Execution halted