Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:37 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CountClust PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 383/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CountClust 1.16.0 Kushal Dey
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped |
Package: CountClust |
Version: 1.16.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:CountClust.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings CountClust_1.16.0.tar.gz |
StartedAt: 2020-10-17 00:17:34 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 00:20:08 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 153.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CountClust.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:CountClust.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings CountClust_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/CountClust.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CountClust/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CountClust’ version ‘1.16.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CountClust’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: data 7.3Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed FitGoM 33.520 0.684 34.220 nullmodel_GoM 20.107 0.020 20.128 compGoM 9.061 0.408 9.747 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.11-bioc/meat/CountClust.Rcheck/00check.log’ for details.
CountClust.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL CountClust ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘CountClust’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CountClust)
CountClust.Rcheck/CountClust-Ex.timings
name | user | system | elapsed | |
BatchCorrectedCounts | 1.040 | 0.016 | 1.056 | |
ExtractTopFeatures | 2.044 | 0.060 | 2.103 | |
FitGoM | 33.520 | 0.684 | 34.220 | |
RemoveSparseFeatures | 0.000 | 0.002 | 0.001 | |
StructureGGplot | 0.848 | 0.004 | 0.853 | |
compGoM | 9.061 | 0.408 | 9.747 | |
compare_omega | 0.028 | 0.000 | 0.028 | |
handleNA | 0.001 | 0.000 | 0.001 | |
nullmodel_GoM | 20.107 | 0.020 | 20.128 | |