Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:18 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CoreGx PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 376/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CoreGx 1.0.2 Benjamin Haibe-Kains
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: CoreGx |
Version: 1.0.2 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CoreGx.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CoreGx_1.0.2.tar.gz |
StartedAt: 2020-10-17 00:04:14 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 00:08:23 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 248.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CoreGx.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:CoreGx.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings CoreGx_1.0.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/CoreGx.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CoreGx/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CoreGx’ version ‘1.0.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CoreGx’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 8 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.11-bioc/meat/CoreGx.Rcheck/00check.log’ for details.
CoreGx.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CoreGx ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘CoreGx’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoreGx)
CoreGx.Rcheck/CoreGx-Ex.timings
name | user | system | elapsed | |
amcc | 2.229 | 0.102 | 2.336 | |
cellInfo-set | 0.011 | 0.001 | 0.011 | |
cellInfo | 0.011 | 0.002 | 0.014 | |
cellNames-set | 0.202 | 0.002 | 0.205 | |
cellNames | 0.000 | 0.001 | 0.000 | |
checkCsetStructure | 0.037 | 0.001 | 0.039 | |
connectivityScore | 0.088 | 0.002 | 0.090 | |
cosinePerm | 0.078 | 0.005 | 0.084 | |
dateCreated | 0.000 | 0.000 | 0.001 | |
dot-distancePointLine | 0 | 0 | 0 | |
dot-distancePointSegment | 0.000 | 0.000 | 0.001 | |
dot-intersectList | 0.001 | 0.000 | 0.000 | |
dot-symSetDiffList | 0.001 | 0.001 | 0.001 | |
dot-unionList | 0.001 | 0.000 | 0.001 | |
fNames-set | 0.029 | 0.001 | 0.032 | |
fNames | 0.015 | 0.010 | 0.025 | |
featureInfo-set | 0.006 | 0.000 | 0.007 | |
featureInfo | 0.056 | 0.003 | 0.059 | |
gwc | 0.107 | 0.014 | 0.120 | |
mDataNames-CoreSet-method | 0.011 | 0.002 | 0.013 | |
mDataNames | 0.001 | 0.000 | 0.001 | |
mcc | 3.136 | 0.067 | 3.205 | |
molecularProfiles-set | 0.057 | 0.002 | 0.058 | |
molecularProfiles | 0.196 | 0.172 | 0.369 | |
molecularProfilesSlot-set | 0.011 | 0.002 | 0.014 | |
molecularProfilesSlot | 0.027 | 0.003 | 0.030 | |
name | 0.000 | 0.001 | 0.000 | |
pertNumber-set | 0 | 0 | 0 | |
pertNumber | 0 | 0 | 0 | |
phenoInfo-set | 0.022 | 0.002 | 0.024 | |
phenoInfo | 0.028 | 0.005 | 0.033 | |
sensNumber-set | 0.000 | 0.000 | 0.001 | |
sensNumber | 0.001 | 0.000 | 0.000 | |
sensitivityInfo-set | 0.000 | 0.000 | 0.001 | |
sensitivityInfo | 0.005 | 0.002 | 0.007 | |
sensitivityMeasures | 0.001 | 0.000 | 0.001 | |
sensitivityProfiles-set | 0.000 | 0.000 | 0.001 | |
sensitivityProfiles | 0.005 | 0.001 | 0.007 | |
show-CoreSet-method | 0.011 | 0.001 | 0.012 | |