Patrick C.N. Martin
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/ChIPanalyser |
| Branch: RELEASE_3_11 |
| Last Commit: c8f1b51 |
| Last Changed Date: 2020-04-27 15:09:59 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:14 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE ChIPanalyser PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 278/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChIPanalyser 1.10.0 Patrick C.N. Martin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: ChIPanalyser |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ChIPanalyser_1.10.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.10.0.zip && rm ChIPanalyser_1.10.0.tar.gz ChIPanalyser_1.10.0.zip |
| StartedAt: 2020-10-16 18:44:56 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:47:28 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 151.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ChIPanalyser_1.10.0.tar.gz && rm -rf ChIPanalyser.buildbin-libdir && mkdir ChIPanalyser.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPanalyser.buildbin-libdir ChIPanalyser_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ChIPanalyser_1.10.0.zip && rm ChIPanalyser_1.10.0.tar.gz ChIPanalyser_1.10.0.zip
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install for i386
* installing *source* package 'ChIPanalyser' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'drop' in package 'ChIPanalyser'
** help
*** installing help indices
converting help for package 'ChIPanalyser'
finding HTML links ... done
BPFrequency-methods html
BPFrequency html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/BPFrequency.Rd:33: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/BPFrequency.Rd:35: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
BPFrequency_--methods html
BPFrequency_- html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/BPFrequency_-.Rd:41: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/BPFrequency_-.Rd:59: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/BPFrequency_-.Rd:60: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
ChIPScore-class html
ChIPanalyser-package html
DNASequenceLength-methods html
DNASequenceLength html
GRList-class html
PFMFormat-methods html
PFMFormat html
PFMFormat_--methods html
PFMFormat_ html
PWMThreshold-methods html
PWMThreshold html
PWMThreshold_--methods html
PWMThreshold_- html
PWMpseudocount-methods html
PWMpseudocount html
PWMpseudocount_--methods html
PWMpseudocount_- html
PositionFrequencyMatrix-methods html
PositionFrequencyMatrix html
PositionFrequencyMatrix_--methods html
PositionFrequencyMatrix_- html
PositionWeightMatrix-methods html
PositionWeightMatrix html
PositionWeightMatrix_--methods html
PositionWeightMatrix_- html
averageExpPWMScore-methods html
averageExpPWMScore html
backgroundSignal-methods html
backgroundSignal html
backgroundSignal_--methods html
backgroundSignal_- html
boundMolecules-methods html
boundMolecules html
boundMolecules_--methods html
boundMolecules_- html
chipMean-methods html
chipMean html
chipMean_--methods html
chipMean_- html
chipSd-methods html
chipSd html
chipSd_--methods html
chipSd_- html
chipSmooth-methods html
chipSmooth html
chipSmooth_--methods html
chipSmooth_- html
computeChIPProfile html
finding level-2 HTML links ... done
computeGenomeWideScores html
computeOccupancy html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computeOccupancy.Rd:66: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computeOccupancy.Rd:68: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
computeOptimal html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computeOptimal.Rd:29: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computeOptimal.Rd:42: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
computePWMScore html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computePWMScore.Rd:20: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computePWMScore.Rd:28: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computePWMScore.Rd:38: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computePWMScore.Rd:64: file link 'GRangesList' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/computePWMScore.Rd:65: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
data html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/data.Rd:24: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/data.Rd:26: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/data.Rd:32: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
drop-methods html
drop html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/drop.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
genomicProfiles-class html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/genomicProfiles-class.Rd:29: file link 'DNAStringSet' in package 'Biostrings' does not exist and so has been treated as a topic
genomicProfiles html
genomicProfilesInternal-class html
initialize-methods html
lambdaPWM-methods html
lambdaPWM html
lambdaPWM_--methods html
lambdaPWM_ html
loci-class html
loci-methods html
loci html
lociWidth-methods html
lociWidth html
lociWidth_--methods html
lociWidth_ html
maxPWMScore-methods html
maxPWMScore html
maxSignal-methods html
maxSignal html
maxSignal_--methods html
maxSignal_- html
minPWMScore-methods html
minPWMScore html
naturalLog-methods html
naturalLog html
naturalLog_--methods html
naturalLog_- html
noOfSites-methods html
noOfSites html
noOfSites_--methods html
noOfSites_- html
noiseFilter-methods html
noiseFilter html
noiseFilter_--methods html
noiseFilter_ html
nos-class html
parameterOptions-class html
parameterOptions html
ploidy-methods html
ploidy html
ploidy_--methods html
ploidy_- html
plotOccupancyProfile html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/plotOccupancyProfile.Rd:20: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/plotOccupancyProfile.Rd:29: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/plotOccupancyProfile.Rd:34: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/plotOccupancyProfile.Rd:47: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
plotOptimalHeatMaps html
processingChIP html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/processingChIP.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpaKCkX6/R.INSTALL20a8385b7a68/ChIPanalyser/man/processingChIP.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
profileAccuracyEstimate html
profiles-methods html
removeBackground-methods html
removeBackground html
removeBackground_--methods html
removeBackground_- html
scores-methods html
scores html
searchSites html
show-methods html
stepSize-methods html
stepSize html
stepSize_--methods html
stepSize_- html
strandRule-methods html
strandRule html
strandRule_--methods html
strandRule_- html
whichstrand-methods html
whichstrand html
whichstrand_--methods html
whichstrand_- html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChIPanalyser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPanalyser' as ChIPanalyser_1.10.0.zip
* DONE (ChIPanalyser)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ChIPanalyser' successfully unpacked and MD5 sums checked