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INSTALL report for ChIPQC on tokay2

This page was generated on 2020-10-17 11:56:15 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE ChIPQC PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 283/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPQC 1.24.1
Tom Carroll , Rory Stark
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/ChIPQC
Branch: RELEASE_3_11
Last Commit: 0b035f0
Last Changed Date: 2020-07-18 12:35:57 -0400 (Sat, 18 Jul 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: ChIPQC
Version: 1.24.1
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ChIPQC_1.24.1.tar.gz && rm -rf ChIPQC.buildbin-libdir && mkdir ChIPQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPQC.buildbin-libdir ChIPQC_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ChIPQC_1.24.1.zip && rm ChIPQC_1.24.1.tar.gz ChIPQC_1.24.1.zip
StartedAt: 2020-10-16 19:27:00 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 19:28:59 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 119.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/ChIPQC_1.24.1.tar.gz && rm -rf ChIPQC.buildbin-libdir && mkdir ChIPQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChIPQC.buildbin-libdir ChIPQC_1.24.1.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL ChIPQC_1.24.1.zip && rm ChIPQC_1.24.1.tar.gz ChIPQC_1.24.1.zip
###
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install for i386

* installing *source* package 'ChIPQC' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ChIPQC'
    finding HTML links ... done
    ChIPQC-data                             html  
    finding level-2 HTML links ... done

    ChIPQC-package                          html  
    ChIPQC                                  html  
    ChIPQCexperiment-class                  html  
    ChIPQCreport                            html  
    ChIPQCsample-class                      html  
    FragmentLengthCrossCoverage-methods     html  
    Normalisedaveragepeaksignal-methods     html  
    QCannotation-methods                    html  
    QCcontrol-methods                       html  
    QCdba-methods                           html  
    QCmetadata-methods                      html  
    QCmetrics-methods                       html  
    QCsample-methods                        html  
    ReadLengthCrossCoverage-methods         html  
    RelativeCrossCoverage-methods           html  
    averagepeaksignal-methods               html  
    coveragehistogram-methods               html  
    crosscoverage-methods                   html  
    duplicateRate-methods                   html  
    duplicates-methods                      html  
    flagtagcounts-methods                   html  
    fragmentlength-methods                  html  
    frip-methods                            html  
    mapped-methods                          html  
    peaks-methods                           html  
    plotCC-methods                          html  
    plotCorHeatmap-methods                  html  
    plotCoverageHist-methods                html  
    plotFribl-methods                       html  
    plotFrip-methods                        html  
    plotPeakProfile-methods                 html  
    plotPrincomp-methods                    html  
    plotRap-methods                         html  
    plotRegi-methods                        html  
    plotSSD-methods                         html  
    readlength-methods                      html  
    reads-methods                           html  
    regi-methods                            html  
    ribl-methods                            html  
    rip-methods                             html  
    ssd-methods                             html  
** building package indices
** installing vignettes
   'ChIPQC.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChIPQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChIPQC' as ChIPQC_1.24.1.zip
* DONE (ChIPQC)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'ChIPQC' successfully unpacked and MD5 sums checked