Glyn Bradley
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/CausalR |
| Branch: RELEASE_3_11 |
| Last Commit: 55a37b2 |
| Last Changed Date: 2020-04-27 14:49:15 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:12 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CausalR PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 237/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CausalR 1.20.0 Glyn Bradley
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: CausalR |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CausalR_1.20.0.tar.gz && rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CausalR.buildbin-libdir CausalR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CausalR_1.20.0.zip && rm CausalR_1.20.0.tar.gz CausalR_1.20.0.zip |
| StartedAt: 2020-10-16 17:32:35 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:33:44 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 68.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CausalR_1.20.0.tar.gz && rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CausalR.buildbin-libdir CausalR_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CausalR_1.20.0.zip && rm CausalR_1.20.0.tar.gz CausalR_1.20.0.zip
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install for i386
* installing *source* package 'CausalR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CausalR'
finding HTML links ... done
AddIDsToVertices html
AddWeightsToEdges html
AnalyseExperimentalData html
AnalysePredictionsList html
CalculateEnrichmentPValue html
CalculateSignificance html
CalculateSignificanceUsingCubicAlgorithm
html
CalculateSignificanceUsingCubicAlgorithm1b
html
CalculateSignificanceUsingQuarticAlgorithm
html
CalculateTotalWeightForAllContingencyTables
html
CalculateWeightGivenValuesInThreeByThreeContingencyTable
html
CausalR-package html
CheckPossibleValuesAreValid html
CheckRowAndColumnSumValuesAreValid html
CompareHypothesis html
ComputeFinalDistribution html
ComputePValueFromDistributionTable html
CreateCCG html
CreateCG html
CreateNetworkFromTable html
DetermineInteractionTypeOfPath html
FindApproximateValuesThatWillMaximiseDValue
html
FindIdsOfConnectedNodesInSubgraph html
FindMaximumDValue html
GetAllPossibleRoundingCombinations html
GetApproximateMaximumDValueFromThreeByTwoContingencyTable
html
GetApproximateMaximumDValueFromTwoByTwoContingencyTable
html
GetCombinationsOfCorrectandIncorrectPredictions
html
GetExplainedNodesOfCCG html
GetInteractionInformation html
GetMatrixOfCausalRelationships html
GetMaxDValueForAFamily html
GetMaxDValueForAThreeByTwoFamily html
GetMaximumDValueFromTwoByTwoContingencyTable
html
GetNodeID html
GetNodeName html
GetNumberOfPositiveAndNegativeEntries html
GetPathsInSifFormat html
GetRegulatedNodes html
GetRowAndColumnSumValues html
GetScoreForNumbersOfCorrectandIncorrectPredictions
html
GetScoresForSingleNode html
GetScoresWeightsMatrix html
GetScoresWeightsMatrixByCubicAlg html
GetSetOfDifferentiallyExpressedGenes html
GetSetOfSignificantPredictions html
GetShortestPathsFromCCG html
GetWeightForNumbersOfCorrectandIncorrectPredictions
html
GetWeightsAboveHypothesisScoreAndTotalWeights
html
GetWeightsAboveHypothesisScoreForAThreeByTwoTable
html
GetWeightsFromInteractionInformation html
MakePredictions html
MakePredictionsFromCCG html
MakePredictionsFromCG html
OrderHypotheses html
PlotGraphWithNodeNames html
PopulateTheThreeByThreeContingencyTable
html
PopulateTwoByTwoContingencyTable html
ProcessExperimentalData html
RankTheHypotheses html
ReadExperimentalData html
ReadSifFileToTable html
RemoveIDsNotInExperimentalData html
ScoreHypothesis html
ValidateFormatOfDataTable html
ValidateFormatOfTable html
WriteAllExplainedNodesToSifFile html
WriteExplainedNodesToSifFile html
runRankHypothesis html
runSCANR html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CausalR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CausalR' as CausalR_1.20.0.zip
* DONE (CausalR)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CausalR' successfully unpacked and MD5 sums checked