Simina M. Boca
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/CancerMutationAnalysis |
| Branch: RELEASE_3_11 |
| Last Commit: 262971b |
| Last Changed Date: 2020-04-27 14:29:21 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:12 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CancerMutationAnalysis PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 227/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CancerMutationAnalysis 1.30.0 Simina M. Boca
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: CancerMutationAnalysis |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CancerMutationAnalysis_1.30.0.tar.gz && rm -rf CancerMutationAnalysis.buildbin-libdir && mkdir CancerMutationAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerMutationAnalysis.buildbin-libdir CancerMutationAnalysis_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CancerMutationAnalysis_1.30.0.zip && rm CancerMutationAnalysis_1.30.0.tar.gz CancerMutationAnalysis_1.30.0.zip |
| StartedAt: 2020-10-16 17:19:37 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 17:20:44 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 66.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CancerMutationAnalysis_1.30.0.tar.gz && rm -rf CancerMutationAnalysis.buildbin-libdir && mkdir CancerMutationAnalysis.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CancerMutationAnalysis.buildbin-libdir CancerMutationAnalysis_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CancerMutationAnalysis_1.30.0.zip && rm CancerMutationAnalysis_1.30.0.tar.gz CancerMutationAnalysis_1.30.0.zip
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install for i386
* installing *source* package 'CancerMutationAnalysis' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c get.cdf.het.berns.c -o get.cdf.het.berns.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CancerMutationAnalysis.dll tmp.def get.cdf.het.berns.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/CancerMutationAnalysis.buildbin-libdir/00LOCK-CancerMutationAnalysis/00new/CancerMutationAnalysis/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CancerMutationAnalysis'
finding HTML links ... done
BackRatesBreast html
BackRatesColon html
BackRatesGBM html
BackRatesMB html
BackRatesPancreas html
EntrezID2Name html
GeneAlterBreast html
GeneAlterColon html
GeneAlterGBM html
GeneAlterMB html
GeneAlterPancreas html
GeneCovBreast html
GeneCovColon html
GeneCovGBM html
GeneCovMB html
GeneCovPancreas html
GeneID2Name11 html
GeneSampBreast html
GeneSampColon html
GeneSampGBM html
GeneSampMB html
GeneSampPancreas html
SetMethodsSims-class html
cma.fdr html
cma.scores html
cma.set.sim html
cma.set.stat html
combine.sims html
extract.sims.method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CancerMutationAnalysis' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c get.cdf.het.berns.c -o get.cdf.het.berns.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CancerMutationAnalysis.dll tmp.def get.cdf.het.berns.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/CancerMutationAnalysis.buildbin-libdir/CancerMutationAnalysis/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CancerMutationAnalysis' as CancerMutationAnalysis_1.30.0.zip
* DONE (CancerMutationAnalysis)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CancerMutationAnalysis' successfully unpacked and MD5 sums checked