##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COSNet
###
##############################################################################
##############################################################################


* checking for file ‘COSNet/DESCRIPTION’ ... OK
* preparing ‘COSNet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘COSNet_v.Rnw’ using Sweave
Loading required package: limma
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:limma’:

    plotMA

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: RBGL
PerfMeas: Performance Measures for ranking and classification tasks.

Warning in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :
  URL 'http://frasca.di.unimi.it/cosnetdata/u.sum.fly.txt': Timeout of 60 seconds was reached

Error: processing vignette 'COSNet_v.Rnw' failed with diagnostics:
 chunk 8 (label = a8) 
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  : 
  cannot read from connection

--- failed re-building ‘COSNet_v.Rnw’

SUMMARY: processing the following file failed:
  ‘COSNet_v.Rnw’

Error: Vignette re-building failed.
Execution halted