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BUILD report for CNVtools on machv2

This page was generated on 2020-10-17 11:58:16 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE CNVtools PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 340/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVtools 1.82.0
Chris Barnes
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/CNVtools
Branch: RELEASE_3_11
Last Commit: 94b0039
Last Changed Date: 2020-04-27 14:20:30 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64  OK  ERROR  skipped  skipped 
machv2 macOS 10.14.6 Mojave / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: CNVtools
Version: 1.82.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CNVtools
StartedAt: 2020-10-16 18:23:37 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 18:23:57 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 20.7 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CNVtools
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* checking for file ‘CNVtools/DESCRIPTION’ ... OK
* preparing ‘CNVtools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CNVtools-vignette.Rnw’ using Sweave
Loading required package: survival
Fitting model  1
	 Iteration 1

Error: processing vignette 'CNVtools-vignette.Rnw' failed with diagnostics:
 chunk 2 (label = model.select) 
Error in CNV.fitModel(ncomp, nind, hyp = "H0", data = data.for.Ccode,  : 
  INTEGER() can only be applied to a 'integer', not a 'character'

--- failed re-building ‘CNVtools-vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘CNVtools-vignette.Rnw’

Error: Vignette re-building failed.
Execution halted