Helder Nakaya
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/CEMiTool |
| Branch: RELEASE_3_11 |
| Last Commit: 6b59055 |
| Last Changed Date: 2020-09-01 23:11:29 -0400 (Tue, 01 Sep 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:13 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE CEMiTool PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 258/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CEMiTool 1.12.2 Helder Nakaya
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CEMiTool |
| Version: 1.12.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CEMiTool_1.12.2.tar.gz && rm -rf CEMiTool.buildbin-libdir && mkdir CEMiTool.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CEMiTool.buildbin-libdir CEMiTool_1.12.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CEMiTool_1.12.2.zip && rm CEMiTool_1.12.2.tar.gz CEMiTool_1.12.2.zip |
| StartedAt: 2020-10-16 18:49:25 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:50:26 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 61.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CEMiTool_1.12.2.tar.gz && rm -rf CEMiTool.buildbin-libdir && mkdir CEMiTool.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CEMiTool.buildbin-libdir CEMiTool_1.12.2.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CEMiTool_1.12.2.zip && rm CEMiTool_1.12.2.tar.gz CEMiTool_1.12.2.zip
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install for i386
* installing *source* package 'CEMiTool' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** exec
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ggplot2::annotate' by 'ggpmisc::annotate' when loading 'CEMiTool'
** help
*** installing help indices
converting help for package 'CEMiTool'
finding HTML links ... done
CEMiTool-class html
adj_data html
cem html
cemitool html
diagnostic_report html
expr0 html
expr_data html
expr_pct_filter html
filter_expr html
find_modules html
fit_data html
generate_report html
get_adj html
get_beta_data html
get_cemitool_r2_beta html
get_connectivity html
get_hubs html
get_merged_mods html
get_mods html
get_phi html
gsea_data html
interactions_data html
mod_colors html
mod_gene_num html
mod_gsea html
mod_names html
mod_ora html
mod_summary html
module_genes html
module_to_gmt html
new_cem html
nmodules html
ora_data html
plot_beta_r2 html
plot_gsea html
plot_hist html
plot_interactions html
plot_mean_k html
plot_mean_var html
plot_ora html
plot_ora_single html
plot_profile html
plot_qq html
plot_sample_tree html
read_gmt html
sample_annot html
sample_annotation html
save_plots html
select_genes html
show-CEMiTool-method html
show_plot html
vst html
write_files html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'ggplot2::annotate' by 'ggpmisc::annotate' when loading 'CEMiTool'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'ggplot2::annotate' by 'ggpmisc::annotate' when loading 'CEMiTool'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CEMiTool' ...
** testing if installed package can be loaded
Warning: replacing previous import 'ggplot2::annotate' by 'ggpmisc::annotate' when loading 'CEMiTool'
* MD5 sums
packaged installation of 'CEMiTool' as CEMiTool_1.12.2.zip
* DONE (CEMiTool)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'CEMiTool' successfully unpacked and MD5 sums checked