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### Running command:
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###   chmod a+r BayesPeak -R && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data BayesPeak
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* checking for file 'BayesPeak/DESCRIPTION' ... OK
* preparing 'BayesPeak':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'BayesPeak.Rnw' using Sweave
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following object is masked from 'package:base':

    expand.grid


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Warning: Package 'BayesPeak' is deprecated and will be removed from Bioconductor
  version 3.12
Warning in summarize.peaks(raw.output, method = "lowerbound", exclude.jobs = unreliable.jobs) :
  No enrichment found on at PP > 0.5 on the following chromosomes: chr1, chr10, chr11, chr12, chr13, chr14, chr15, chr17, chr18, chr19, chr2, chr20, chr21, chr22, chr3, chr4, chr5, chr6, chr7, chr8, chr9, chrM, chrX, chrY

Error: processing vignette 'BayesPeak.Rnw' failed with diagnostics:
 chunk 22 (label = OF4) 
Error : RangedData objects are defunct. Please migrate your code to use GRanges
  or GRangesList objects instead. See IMPORTANT NOTE in ?RangedData

--- failed re-building 'BayesPeak.Rnw'

SUMMARY: processing the following file failed:
  'BayesPeak.Rnw'

Error: Vignette re-building failed.
Execution halted