Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:11 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE BPRMeth PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 196/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BPRMeth 1.14.1 Chantriolnt-Andreas Kapourani
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: BPRMeth |
Version: 1.14.1 |
Command: rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.14.1.tar.gz |
StartedAt: 2020-10-17 09:58:42 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 10:00:21 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 99.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: BPRMeth_1.14.1.zip |
PackageFileSize: 3.703 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.14.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'BPRMeth' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BPRMeth.buildbin-libdir/00LOCK-BPRMeth/00new/BPRMeth/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BPRMeth' finding HTML links ... done BPRMeth html bernoulli_data html beta_data html binomial_data html boxplot_cluster_expr html bpr_cluster_wrap html bpr_optimize html bpr_predict_wrap html cluster_profiles_mle html cluster_profiles_vb html create_anno_region html create_basis html create_region_object html design_matrix html encode_expr html encode_met html eval_functions html gaussian_data html gex_data html impute_bulk_met html infer_profiles_gibbs html infer_profiles_mle html infer_profiles_vb html inner_predict_model_expr html inner_train_model_expr html meth_data html model_log_likelihood html old_boxplot_cluster_gex html old_plot_cluster_prof html old_plot_fitted_profiles html partition_bulk_dataset html plot_cluster_profiles html plot_infer_profiles html finding level-2 HTML links ... done plot_predicted_expr html pool_bs_seq_rep html predict_expr html preprocess_bs_seq html preprocess_final_HTS_data html process_haib_caltech_wrap html read_anno html read_bs_encode_haib html read_chrom_size html read_expr html read_met html read_rna_encode_caltech html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BPRMeth' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.11-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BPRMeth' as BPRMeth_1.14.1.zip * DONE (BPRMeth)