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CHECK report for BAGS on tokay2

This page was generated on 2020-10-17 11:56:07 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE BAGS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 107/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BAGS 2.28.0
Alejandro Quiroz-Zarate
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/BAGS
Branch: RELEASE_3_11
Last Commit: 7f058d9
Last Changed Date: 2020-04-27 14:28:21 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BAGS
Version: 2.28.0
Command: C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BAGS.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings BAGS_2.28.0.tar.gz
StartedAt: 2020-10-17 01:42:44 -0400 (Sat, 17 Oct 2020)
EndedAt: 2020-10-17 01:45:57 -0400 (Sat, 17 Oct 2020)
EllapsedTime: 193.8 seconds
RetCode: 0
Status:  OK  
CheckDir: BAGS.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:BAGS.install-out.txt --library=C:\Users\biocbuild\bbs-3.11-bioc\R\library --no-vignettes --timings BAGS_2.28.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.11-bioc/meat/BAGS.Rcheck'
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BAGS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BAGS' version '2.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BAGS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'Biobase'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BAGS/libs/i386/BAGS.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'C:/Users/biocbuild/bbs-3.11-bioc/R/library/BAGS/libs/x64/BAGS.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
Gibbs2       37.79   0.19   37.97
DataGeneSets 10.10   0.11   15.22
MCMCDataSet   9.32   0.12    9.45
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
Gibbs2       54.70   0.32   55.09
MCMCDataSet  13.51   0.18   13.71
DataGeneSets 13.13   0.14   13.27
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.11-bioc/meat/BAGS.Rcheck/00check.log'
for details.

Installation output

BAGS.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/BAGS_2.28.0.tar.gz && rm -rf BAGS.buildbin-libdir && mkdir BAGS.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BAGS.buildbin-libdir BAGS_2.28.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL BAGS_2.28.0.zip && rm BAGS_2.28.0.tar.gz BAGS_2.28.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 94651  100 94651    0     0  1110k      0 --:--:-- --:--:-- --:--:-- 1216k

install for i386

* installing *source* package 'BAGS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
FuncionesFast-Final.h: In function 'BetaFunCSDiff2':
FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
     double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
                                                                      ^~~~
FuncionesFast-Final.h: In function 'AlfaFunCS':
FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                                         ^~~~~~~~~
FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                              ^
FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                            ^
BAGS.c: In function 'Gibbs5':
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                                ^~~~
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                           ^~~~
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                    ^~~~~~
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                            ^~~~~~~
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                    ^~~~~~~
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
            ^~~~~~~
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
                                                                                ^~~~~~~
BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
BAGS.c: In function 'Gibbs4':
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^~~~
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^~~~
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^~~~~~
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^~~~~~~
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^~~~~~~
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^~~~~~~
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
                                                               ^~~~~~~
BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
BAGS.c: In function 'Gibbs3':
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^~~~
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^~~~
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^~~~~~
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^~~~~~~
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^~~~~~~
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^~~~~~~
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
                                              ^~~~~~~
BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
BAGS.c: In function 'Gibbs2':
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^~~~
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^~~~
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^~~~~~
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^~~~~~~
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^~~~~~~
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^~~~~~~
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResSgmA1,ResSgmA;
                             ^~~~~~~
BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BAGS.buildbin-libdir/00LOCK-BAGS/00new/BAGS/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BAGS'
    finding HTML links ... done
    AnnotationMFGO                          html  
    BAGS-internal                           html  
    BAGS-package                            html  
    DataGeneSets                            html  
    Gibbs2                                  html  
    Gibbs3                                  html  
    Gibbs4                                  html  
    Gibbs5                                  html  
    MCMCDataSet                             html  
    ReadGMT                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BAGS' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BAGS.c -o BAGS.o
In file included from BAGS.c:8:
FuncionesFast-Final.h: In function 'BetaFunCSDiff2':
FuncionesFast-Final.h:145:70: warning: unused variable 'YMu1' [-Wunused-variable]
     double media1,media,varianza1,varianza,resultado,varaux0,varaux1,YMu1;
                                                                      ^~~~
FuncionesFast-Final.h: In function 'AlfaFunCS':
FuncionesFast-Final.h:166:105: warning: unused variable 'MediaDiff' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                                         ^~~~~~~~~
FuncionesFast-Final.h:166:94: warning: unused variable 'A' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                              ^
FuncionesFast-Final.h:166:92: warning: unused variable 'C' [-Wunused-variable]
     double CSiDiff,CNoDiff,Cest,Mu,aux1,aux4,suma,zuma,cons,rznLog,rzn,prob,alea,resultado,C,A,varianza,MediaDiff;
                                                                                            ^
BAGS.c: In function 'Gibbs5':
BAGS.c:25:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                                ^~~~
BAGS.c:25:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                           ^~~~
BAGS.c:25:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                                    ^~~~~~
BAGS.c:25:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                            ^~~~~~~
BAGS.c:25:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
                    ^~~~~~~
BAGS.c:25:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;
            ^~~~~~~
BAGS.c:24:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:18:80: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResRho4,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA4,ResSgmA;
                                                                                ^~~~~~~
BAGS.c:15:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
BAGS.c: In function 'Gibbs4':
BAGS.c:342:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^~~~
BAGS.c:342:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^~~~
BAGS.c:342:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^~~~~~
BAGS.c:342:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^~~~~~~
BAGS.c:342:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^~~~~~~
BAGS.c:342:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^~~~~~~
BAGS.c:341:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:335:63: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResRho3,ResSgmA1,ResSgmA2,ResSgmA3,ResSgmA;
                                                               ^~~~~~~
BAGS.c:332:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
BAGS.c: In function 'Gibbs3':
BAGS.c:593:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^~~~
BAGS.c:593:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^~~~
BAGS.c:593:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^~~~~~
BAGS.c:593:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^~~~~~~
BAGS.c:593:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^~~~~~~
BAGS.c:593:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^~~~~~~
BAGS.c:592:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:586:46: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResRho2,ResSgmA1,ResSgmA2,ResSgmA;
                                              ^~~~~~~
BAGS.c:583:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
BAGS.c: In function 'Gibbs2':
BAGS.c:786:48: warning: unused variable 'resI' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                                ^~~~
BAGS.c:786:43: warning: unused variable 'rate' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                           ^~~~
BAGS.c:786:36: warning: unused variable 'escala' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                                    ^~~~~~
BAGS.c:786:28: warning: unused variable 'escala3' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                            ^~~~~~~
BAGS.c:786:20: warning: unused variable 'escala2' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
                    ^~~~~~~
BAGS.c:786:12: warning: unused variable 'escala1' [-Wunused-variable]
     double escala1,escala2,escala3,escala,rate,resI;    // Aqui tengo duda
            ^~~~~~~
BAGS.c:785:12: warning: unused variable 'formaAux' [-Wunused-variable]
     double formaAux;
            ^~~~~~~~
BAGS.c:779:29: warning: variable 'ResSgmA' set but not used [-Wunused-but-set-variable]
     double ResRho1,ResSgmA1,ResSgmA;
                             ^~~~~~~
BAGS.c:776:15: warning: variable 'AaPi' set but not used [-Wunused-but-set-variable]
     double Mm,AaPi,Ade,Ss,Rr,c0,prob,alea,forma1,forma2,shape1,shape2;
               ^~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BAGS.dll tmp.def BAGS.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BAGS.buildbin-libdir/BAGS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BAGS' as BAGS_2.28.0.zip
* DONE (BAGS)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'BAGS' successfully unpacked and MD5 sums checked

Tests output

Example timings

BAGS.Rcheck/examples_i386/BAGS-Ex.timings

nameusersystemelapsed
AnnotationMFGO0.030.000.03
BAGS-package000
DataGeneSets10.10 0.1115.22
Gibbs237.79 0.1937.97
Gibbs3000
Gibbs4000
Gibbs5000
MCMCDataSet9.320.129.45
ReadGMT000

BAGS.Rcheck/examples_x64/BAGS-Ex.timings

nameusersystemelapsed
AnnotationMFGO0.040.000.03
BAGS-package000
DataGeneSets13.13 0.1413.27
Gibbs254.70 0.3255.09
Gibbs3000
Gibbs4000
Gibbs5000
MCMCDataSet13.51 0.1813.71
ReadGMT000