Jesper R Gadin
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/AllelicImbalance |
| Branch: RELEASE_3_11 |
| Last Commit: 06924db |
| Last Changed Date: 2020-04-27 14:36:41 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:04 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE AllelicImbalance PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 43/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| AllelicImbalance 1.26.0 Jesper R Gadin
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: AllelicImbalance |
| Version: 1.26.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/AllelicImbalance_1.26.0.tar.gz && rm -rf AllelicImbalance.buildbin-libdir && mkdir AllelicImbalance.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AllelicImbalance.buildbin-libdir AllelicImbalance_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL AllelicImbalance_1.26.0.zip && rm AllelicImbalance_1.26.0.tar.gz AllelicImbalance_1.26.0.zip |
| StartedAt: 2020-10-16 19:39:30 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 19:41:22 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 111.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/AllelicImbalance_1.26.0.tar.gz && rm -rf AllelicImbalance.buildbin-libdir && mkdir AllelicImbalance.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AllelicImbalance.buildbin-libdir AllelicImbalance_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL AllelicImbalance_1.26.0.zip && rm AllelicImbalance_1.26.0.tar.gz AllelicImbalance_1.26.0.zip
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install for i386
* installing *source* package 'AllelicImbalance' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'chisq.test' from package 'stats' in package 'AllelicImbalance'
Creating a generic function for 'binom.test' from package 'stats' in package 'AllelicImbalance'
** help
*** installing help indices
converting help for package 'AllelicImbalance'
finding HTML links ... done
ASEset-barplot html
ASEset-class html
ASEset-filters html
ASEset-gbarplot html
ASEset-glocationplot html
ASEset-gviztrack html
ASEset-scanForHeterozygotes html
ASEset.old html
ASEset.sim html
ASEsetFromBam html
AllelicImbalance-package html
DetectedAI-class html
DetectedAI-plot html
DetectedAI-summary html
GRvariants html
GlobalAnalysis-class html
LinkVariantAlmlof-class html
LinkVariantAlmlof-plot html
RegionSummary-class html
RiskVariant-class html
annotation-wrappers html
annotationBarplot html
barplot-lattice-support html
binom.test html
chisq.test html
cigar-utilities html
countAllelesFromBam html
coverageMatrixListFromGAL html
decorateWithExons html
decorateWithGenes html
defaultMapBias html
defaultPhase html
detectAI html
fractionPlotDf html
gba html
genomatrix html
genotype2phase html
getAlleleCounts html
getAlleleQuality html
getAreaFromGeneNames html
getDefaultMapBiasExpMean html
getSnpIdFromLocation html
histplot html
implodeList-old html
import-bam-2 html
import-bam html
import-bcf html
inferAlleles html
inferAltAllele html
inferGenotypes html
initialize-ASEset html
initialize-DetectedAI html
initialize-GlobalAnalysis html
initialize-RiskVariant html
legendBarplot html
locationplot html
lva html
lva.internal html
makeMaskedFasta html
mapBiasRef html
minCountFilt html
minFreqFilt html
multiAllelicFilt html
phase2genotype html
phaseArray2phaseMatrix html
phaseMatrix2Array html
randomRef html
reads html
refAllele html
regionSummary html
scanForHeterozygotes-old html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AllelicImbalance' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AllelicImbalance' as AllelicImbalance_1.26.0.zip
* DONE (AllelicImbalance)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'AllelicImbalance' successfully unpacked and MD5 sums checked