Khadija El Amrani
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/sampleClassifier |
| Branch: RELEASE_3_10 |
| Last Commit: f0cb265 |
| Last Changed Date: 2019-10-29 13:10:17 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:27:54 -0400 (Wed, 15 Apr 2020).
| Package 1511/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sampleClassifier 1.10.0 Khadija El Amrani
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sampleClassifier |
| Version: 1.10.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sampleClassifier.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings sampleClassifier_1.10.0.tar.gz |
| StartedAt: 2020-04-15 06:22:27 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:30:45 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 498.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: sampleClassifier.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:sampleClassifier.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings sampleClassifier_1.10.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/sampleClassifier.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sampleClassifier/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sampleClassifier' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sampleClassifier' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
classifyProfile.rnaseq 80.43 0.31 81.38
classifyProfile 27.67 1.20 29.82
get.heatmap 26.00 0.44 26.43
classifyProfile.svm 25.75 0.39 26.14
classifyProfile.rnaseq.svm 12.28 0.16 12.44
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
classifyProfile.rnaseq 100.87 0.61 101.49
classifyProfile 41.69 0.80 42.48
classifyProfile.svm 27.26 0.30 27.56
get.heatmap 25.53 0.26 25.79
classifyProfile.rnaseq.svm 16.24 0.17 16.41
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
sampleClassifier.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/sampleClassifier_1.10.0.tar.gz && rm -rf sampleClassifier.buildbin-libdir && mkdir sampleClassifier.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sampleClassifier.buildbin-libdir sampleClassifier_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL sampleClassifier_1.10.0.zip && rm sampleClassifier_1.10.0.tar.gz sampleClassifier_1.10.0.zip
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install for i386
* installing *source* package 'sampleClassifier' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sampleClassifier'
finding HTML links ... done
classifyProfile html
classifyProfile.rnaseq html
classifyProfile.rnaseq.svm html
classifyProfile.svm html
get.heatmap html
sampleClassifier-internal html
sampleClassifier-package html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sampleClassifier' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sampleClassifier' as sampleClassifier_1.10.0.zip
* DONE (sampleClassifier)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'sampleClassifier' successfully unpacked and MD5 sums checked
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sampleClassifier.Rcheck/examples_i386/sampleClassifier-Ex.timings
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sampleClassifier.Rcheck/examples_x64/sampleClassifier-Ex.timings
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