Benilton Carvalho
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/pdInfoBuilder |
| Branch: RELEASE_3_10 |
| Last Commit: 896b3de |
| Last Changed Date: 2019-10-29 13:07:46 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:17:54 -0400 (Wed, 15 Apr 2020).
| Package 1242/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pdInfoBuilder 1.50.0 Benilton Carvalho
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: pdInfoBuilder |
| Version: 1.50.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/pdInfoBuilder_1.50.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.50.0.zip && rm pdInfoBuilder_1.50.0.tar.gz pdInfoBuilder_1.50.0.zip |
| StartedAt: 2020-04-14 19:42:24 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:43:52 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 87.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/pdInfoBuilder_1.50.0.tar.gz && rm -rf pdInfoBuilder.buildbin-libdir && mkdir pdInfoBuilder.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pdInfoBuilder.buildbin-libdir pdInfoBuilder_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL pdInfoBuilder_1.50.0.zip && rm pdInfoBuilder_1.50.0.tar.gz pdInfoBuilder_1.50.0.zip
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100 362k 100 362k 0 0 10.2M 0 --:--:-- --:--:-- --:--:-- 11.4M
install for i386
* installing *source* package 'pdInfoBuilder' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c pdInfoBuilder.c -o pdInfoBuilder.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/pdInfoBuilder.buildbin-libdir/00LOCK-pdInfoBuilder/00new/pdInfoBuilder/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** help
*** installing help indices
converting help for package 'pdInfoBuilder'
finding HTML links ... done
AffyClariomSPDInfoPkgSeed-class html
AffyExpressionPDInfoPkgSeed-class html
AffySNPCNVPDInfoPkgSeed-class html
AffySNPCNVPDInfoPkgSeed2-class html
AffySNPPDInfoPkgSeed-class html
AffySNPPDInfoPkgSeed2-class html
AffySTPDInfoPkgSeed-class html
AffyTilingPDInfoPkgSeed-class html
GenericArrayFunctions html
NgsExpressionPDInfoPkgSeed-class html
NgsTilingPDInfoPkgSeed-class html
NimbleGenPDInfoPkgSeed-class html
chipName html
getGeometry html
makePdInfoPackage html
** building package indices
** installing vignettes
'BuildingPDInfoPkgs.Rnw'
'howto-AffymetrixMapping.Rnw'
** testing if installed package can be loaded from temporary location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** testing if installed package can be loaded from final location
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pdInfoBuilder' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c pdInfoBuilder.c -o pdInfoBuilder.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o pdInfoBuilder.dll tmp.def pdInfoBuilder.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/pdInfoBuilder.buildbin-libdir/pdInfoBuilder/libs/x64
** testing if installed package can be loaded
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'oligo'
No methods found in package 'RSQLite' for request: 'dbGetQuery' when loading 'pdInfoBuilder'
* MD5 sums
packaged installation of 'pdInfoBuilder' as pdInfoBuilder_1.50.0.zip
* DONE (pdInfoBuilder)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'pdInfoBuilder' successfully unpacked and MD5 sums checked