Joseph N. Paulson
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/pandaR |
| Branch: RELEASE_3_10 |
| Last Commit: 85c61b6 |
| Last Changed Date: 2019-10-29 13:09:17 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:24:52 -0400 (Wed, 15 Apr 2020).
| Package 1213/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pandaR 1.18.0 Joseph N. Paulson
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: pandaR |
| Version: 1.18.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pandaR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings pandaR_1.18.0.tar.gz |
| StartedAt: 2020-04-15 05:18:42 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 05:20:26 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 104.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pandaR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:pandaR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings pandaR_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/pandaR.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pandaR/DESCRIPTION' ... OK
* this is package 'pandaR' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'pandaR' can be installed ... OK
* checking installed package size ... NOTE
installed size is 9.3Mb
sub-directories of 1Mb or more:
data 9.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
plot.panda
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dFunction: no visible global function definition for 'cor'
importPandaMatlab: no visible global function definition for
'read.delim'
panda: no visible global function definition for 'cor'
panda: no visible global function definition for 'aggregate'
plot.panda: no visible global function definition for 'hist'
plotCommunityDetection: no visible global function definition for
'title'
plotZbyTF: no visible global function definition for 'aggregate'
prepResult: no visible global function definition for 'pnorm'
Undefined global functions or variables:
aggregate cor hist pnorm read.delim title
Consider adding
importFrom("graphics", "hist", "title")
importFrom("stats", "aggregate", "cor", "pnorm")
importFrom("utils", "read.delim")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.panda':
'plot.panda'
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
panda 7.58 0.84 8.42
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
panda 6.09 0.73 6.83
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 4 NOTEs
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/pandaR.Rcheck/00check.log'
for details.
pandaR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/pandaR_1.18.0.tar.gz && rm -rf pandaR.buildbin-libdir && mkdir pandaR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pandaR.buildbin-libdir pandaR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL pandaR_1.18.0.zip && rm pandaR_1.18.0.tar.gz pandaR_1.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
34 8845k 34 3008k 0 0 13.4M 0 --:--:-- --:--:-- --:--:-- 13.5M
100 8845k 100 8845k 0 0 26.5M 0 --:--:-- --:--:-- --:--:-- 26.7M
install for i386
* installing *source* package 'pandaR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'pandaR'
finding HTML links ... done
calcDegree html
calcDegreeDifference html
importPandaMatlab html
multiplot html
panda html
pandaR html
pandaResult html
pandaResultPairs html
pandaToyData html
plot.panda html
plotCommunityDetection html
plotGraph html
plotZ html
plotZbyTF html
print.panda html
subnetwork html
summary.panda html
targetedGenes html
testMotif html
topedges html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'pandaR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pandaR' as pandaR_1.18.0.zip
* DONE (pandaR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'pandaR' successfully unpacked and MD5 sums checked
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pandaR.Rcheck/examples_i386/pandaR-Ex.timings
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pandaR.Rcheck/examples_x64/pandaR-Ex.timings
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