Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:17:03 -0400 (Wed, 15 Apr 2020).
Package 1154/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
nnNorm 2.50.0 Adi Laurentiu Tarca
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: nnNorm |
Version: 2.50.0 |
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:nnNorm.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings nnNorm_2.50.0.tar.gz |
StartedAt: 2020-04-15 05:08:02 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 05:12:16 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 253.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: nnNorm.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:nnNorm.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings nnNorm_2.50.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/nnNorm.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'nnNorm/DESCRIPTION' ... OK * this is package 'nnNorm' version '2.50.0' * checking package namespace information ... NOTE Namespace with empty importFrom: 'methods' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'nnNorm' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: 'marray' A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE detectSpatialBias: no visible global function definition for 'as' maNormNN: no visible global function definition for 'as' maNormNN: no visible global function definition for 'slot<-' Undefined global functions or variables: as slot<- Consider adding importFrom("methods", "as", "slot<-") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed maNormNN 69.45 0.02 69.49 compNorm 35.81 0.07 35.93 detectSpatialBias 9.41 0.02 9.42 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed maNormNN 65.35 0.00 65.41 compNorm 33.59 0.08 33.68 detectSpatialBias 7.56 0.00 7.59 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/nnNorm.Rcheck/00check.log' for details.
nnNorm.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/nnNorm_2.50.0.tar.gz && rm -rf nnNorm.buildbin-libdir && mkdir nnNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nnNorm.buildbin-libdir nnNorm_2.50.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL nnNorm_2.50.0.zip && rm nnNorm_2.50.0.tar.gz nnNorm_2.50.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1472k 100 1472k 0 0 28.9M 0 --:--:-- --:--:-- --:--:-- 31.2M install for i386 * installing *source* package 'nnNorm' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'nnNorm' finding HTML links ... done compNorm html detectSpatialBias html maNormNN html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'nnNorm' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'nnNorm' as nnNorm_2.50.0.zip * DONE (nnNorm) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'nnNorm' successfully unpacked and MD5 sums checked
nnNorm.Rcheck/examples_i386/nnNorm-Ex.timings
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nnNorm.Rcheck/examples_x64/nnNorm-Ex.timings
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