Package: maSigPro

Version: 1.58.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings maSigPro_1.58.0.tar.gz

StartedAt: 2020-04-15 00:16:55 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 00:20:18 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 203.8 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings maSigPro_1.58.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/maSigPro.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.58.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
seeDS         17.280  0.040  18.120
tableDS       16.568  0.052  16.889
IsoPlot       16.532  0.004  16.607
getDSPatterns 16.464  0.008  16.735
IsoModel      16.236  0.028  16.420
ISOdesign     15.944  0.008  15.996
getDS         15.676  0.040  15.921
PodiumChange  15.580  0.000  15.597
ISOdata       15.284  0.044  15.374
T.fit          6.912  0.004   6.938
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL maSigPro
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘maSigPro.Rnw’ 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

name	user	system	elapsed
ISOdata	15.284	0.044	15.374
ISOdesign	15.944	0.008	15.996
IsoModel	16.236	0.028	16.420
IsoPlot	16.532	0.004	16.607
NBdata	0.000	0.000	0.002
NBdesign	0.000	0.000	0.001
PlotGroups	0.036	0.000	0.040
PlotProfiles	0.016	0.004	0.022
PodiumChange	15.580	0.000	15.597
T.fit	6.912	0.004	6.938
average.rows	0.004	0.000	0.003
data.abiotic	0.008	0.000	0.006
edesign.abiotic	0.000	0.000	0.002
edesignCT	0.000	0.000	0.001
edesignDR	0.000	0.000	0.001
get.siggenes	3.596	0.004	3.608
getDS	15.676	0.040	15.921
getDSPatterns	16.464	0.008	16.735
i.rank	0.000	0.000	0.001
maSigPro	4.692	0.008	4.718
maSigProUsersGuide	0.004	0.008	0.015
make.design.matrix	0.012	0.000	0.012
p.vector	2.540	0.024	2.599
position	0	0	0
reg.coeffs	0	0	0
see.genes	1.280	0.052	2.481
seeDS	17.28	0.04	18.12
stepback	0.02	0.00	0.02
stepfor	0.088	0.000	0.090
suma2Venn	0.024	0.004	0.034
tableDS	16.568	0.052	16.889
two.ways.stepback	0.080	0.000	0.082
two.ways.stepfor	0.100	0.000	0.099