Package: iCheck

Version: 1.16.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings iCheck_1.16.0.tar.gz

StartedAt: 2020-04-15 03:20:50 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 03:25:49 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 298.9 seconds

RetCode: 0

Status:  OK

CheckDir: iCheck.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:iCheck.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings iCheck_1.16.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/iCheck.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘iCheck/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘iCheck’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘iCheck’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL iCheck
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘iCheck’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
** testing if installed package can be loaded from final location
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
** testing if installed package keeps a record of temporary installation path
* DONE (iCheck)

name	user	system	elapsed
LumiBatch2Table	0.120	0.012	0.131
R2PlotFunc	0.220	0.016	0.270
boxPlots	1.132	0.080	1.248
densityPlots	0.132	0.000	0.132
genSimData.BayesNormal	0.044	0.000	0.044
getPCAFunc	0.072	0.000	0.069
glmWrapper	0.524	0.036	0.581
lkhrWrapper	0.712	0.060	0.775
lmFitPaired	0.060	0.008	0.067
lmFitWrapper	0.092	0.000	0.092
pca2DPlot	0.112	0.000	0.109
pca3DPlot	0.072	0.004	0.075
plotCurves	0.048	0.000	0.051
plotQCCurves	0.084	0.000	0.088
plotSamplep95p05	0.080	0.004	0.086
quantilePlot	0.108	0.000	0.109
scatterPlots	0.132	0.000	0.134
sortExpressionSet	0.080	0.000	0.078