Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:31:56 -0400 (Wed, 15 Apr 2020).
Package 807/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
hypeR 1.2.0 Anthony Federico
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: hypeR |
Version: 1.2.0 |
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings hypeR_1.2.0.tar.gz |
StartedAt: 2020-04-15 03:56:56 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 04:01:45 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 288.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: hypeR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:hypeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings hypeR_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/hypeR.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'hypeR/DESCRIPTION' ... OK * this is package 'hypeR' version '1.2.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'hypeR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .dots_plot: no visible binding for global variable 'pval' .dots_plot: no visible binding for global variable 'fdr' .dots_plot: no visible binding for global variable 'significance' .dots_plot: no visible binding for global variable 'size' .enrichment_map: no visible binding for global variable 'pval' .enrichment_map: no visible binding for global variable 'fdr' .find_members: no visible binding for global variable 'from' .find_members: no visible binding for global variable 'to' .hiearchy_map: no visible binding for global variable 'pval' .hiearchy_map: no visible binding for global variable 'fdr' .hiearchy_map : <anonymous>: no visible binding for global variable 'label' .hyper_enrichment: no visible global function definition for 'is' .ks_enrichment: no visible global function definition for 'is' enrichr_available: no visible binding for global variable '.' ggvenn: no visible binding for global variable 'x' ggvenn: no visible binding for global variable 'y' hyp_dots: no visible global function definition for 'is' hyp_emap: no visible global function definition for 'is' hyp_hmap: no visible global function definition for 'is' hyp_show: no visible global function definition for 'is' hyp_to_excel: no visible global function definition for 'is' hyp_to_excel: no visible global function definition for 'packageVersion' hyp_to_rmd: no visible global function definition for 'is' hyp_to_rmd : <anonymous>: no visible global function definition for 'is' hyp_to_table: no visible global function definition for 'is' hyp_to_table: no visible global function definition for 'packageVersion' hyp_to_table: no visible global function definition for 'write.table' hypeR: no visible global function definition for 'is' msigdb_available: no visible binding for global variable 'gs_cat' msigdb_available: no visible binding for global variable 'gs_subcat' msigdb_download: no visible binding for global variable 'gs_name' msigdb_download: no visible binding for global variable 'gene_symbol' msigdb_download: no visible binding for global variable '.' msigdb_version: no visible global function definition for 'packageVersion' Undefined global functions or variables: . fdr from gene_symbol gs_cat gs_name gs_subcat is label packageVersion pval significance size to write.table x y Consider adding importFrom("methods", "is") importFrom("utils", "packageVersion", "write.table") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed msigdb_available 7.64 1.20 8.89 hyp_hmap 4.25 0.08 5.12 hyp_show 0.69 0.11 7.10 enrichr_download 0.10 0.00 8.89 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed msigdb_available 8.51 0.45 8.99 hyp_hmap 5.94 0.06 6.33 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/hypeR.Rcheck/00check.log' for details.
hypeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/hypeR_1.2.0.tar.gz && rm -rf hypeR.buildbin-libdir && mkdir hypeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hypeR.buildbin-libdir hypeR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL hypeR_1.2.0.zip && rm hypeR_1.2.0.tar.gz hypeR_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 639k 100 639k 0 0 12.5M 0 --:--:-- --:--:-- --:--:-- 13.5M install for i386 * installing *source* package 'hypeR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hypeR' finding HTML links ... done dot-check_overlap html dot-dots_plot html dot-enrichment_map html dot-find_members html dot-format_str html dot-hiearchy_map html dot-hyper_enrichment html dot-jaccard_similarity html dot-ks_enrichment html dot-kstest html dot-overlap_similarity html dot-reverselog_trans html dot-string_args html enrichr_available html enrichr_connect html enrichr_download html enrichr_gsets html ggempty html ggeplot html ggvenn html gsets html hyp html hyp_dots html hyp_emap html hyp_hmap html hyp_show html hyp_to_excel html hyp_to_rmd html hyp_to_table html hypeR html hyperdb_info html hyperdb_rgsets html msigdb_available html msigdb_check_species html msigdb_download html msigdb_gsets html msigdb_info html msigdb_species html msigdb_version html multihyp html pvector html rgsets html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'hypeR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'hypeR' as hypeR_1.2.0.zip * DONE (hypeR) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'hypeR' successfully unpacked and MD5 sums checked
hypeR.Rcheck/tests_i386/testthat.Rout R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > library(hypeR) > > test_check("hypeR") Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output hyp.1.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmp4StsmH\rmarkdown-str323c440e1bd4.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output multihyp.1.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmp4StsmH\rmarkdown-str323c6c477936.html" 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--email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmp4StsmH\rmarkdown-str323c6d8536ec.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments 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ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output hyp.4.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmp4StsmH\rmarkdown-str323c20275743.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output multihyp.4.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template 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--section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmp4StsmH\rmarkdown-str323c34625a64.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.3.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output combo.3.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmp4StsmH\rmarkdown-str323c199c21bb.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 == testthat results =========================================================== [ OK: 409 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 54.23 3.62 66.87 |
hypeR.Rcheck/tests_x64/testthat.Rout R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(magrittr) Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not > library(hypeR) > > test_check("hypeR") Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output 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code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output multihyp.1.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e444c876237.html" 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--email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e445868f39.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments 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ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS hyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output hyp.4.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e4445b36f70.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS multihyp.4.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output multihyp.4.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e441c4649c3.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.1.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output combo.1.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e44454e868.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.2.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output combo.2.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e44279295b.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 inline R code fragments label: setup (with options) List of 2 $ echo : logi FALSE $ message: logi FALSE inline R code fragments label: 1 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 2 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 3 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" inline R code fragments label: 4 (with options) List of 2 $ fig.width: num 8.25 $ fig.align: chr "center" ordinary text without R code "C:/PROGRA~2/Pandoc/pandoc" +RTS -K512m -RTS combo.3.utf8.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash+smart --output combo.3.rmd.html --email-obfuscation none --self-contained --standalone --section-divs --table-of-contents --toc-depth 1 --variable toc_float=1 --variable toc_selectors=h1 --variable toc_collapsed=1 --variable toc_smooth_scroll=1 --variable toc_print=1 --template "C:\Users\biocbuild\bbs-3.10-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable "theme:united" --include-in-header "C:\Users\biocbuild\bbs-3.10-bioc\tmpdir\Rtmpkf9Kzr\rmarkdown-str1e4448c31d91.html" --mathjax --variable "mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/pagebreak.lua" --lua-filter "C:/Users/biocbuild/bbs-3.10-bioc/R/library/rmarkdown/rmd/lua/latex-div.lua" --variable code_folding=hide --variable code_menu=1 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 Signature 1 Signature 2 Signature 3 == testthat results =========================================================== [ OK: 409 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 52.98 2.81 62.26 |
hypeR.Rcheck/examples_i386/hypeR-Ex.timings
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hypeR.Rcheck/examples_x64/hypeR-Ex.timings
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