Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:36:15 -0400 (Wed, 15 Apr 2020).
Package 672/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
genoCN 1.38.0 Wei Sun
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | [ OK ] | OK | OK | OK |
Package: genoCN |
Version: 1.38.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genoCN |
StartedAt: 2020-04-14 18:11:15 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 18:11:53 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 38.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genoCN ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘genoCN’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c tnorm_mle.c -o tnorm_mle.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c utility.c -o utility.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c xCNV.c -o xCNV.o xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable] int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR; ^ xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable] int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR; ^ xCNV.c:787:10: warning: unused variable 'mu_b_tmp' [-Wunused-variable] double mu_b_tmp, sd_b_tmp; ^ xCNV.c:787:20: warning: unused variable 'sd_b_tmp' [-Wunused-variable] double mu_b_tmp, sd_b_tmp; ^ 4 warnings generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-genoCN/00new/genoCN/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (genoCN)