Z. Wu
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/gcrma |
| Branch: RELEASE_3_10 |
| Last Commit: 38ebb44 |
| Last Changed Date: 2019-10-29 13:07:24 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:16:45 -0400 (Wed, 15 Apr 2020).
| Package 636/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gcrma 2.58.0 Z. Wu
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: gcrma |
| Version: 2.58.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/gcrma_2.58.0.tar.gz && rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcrma.buildbin-libdir gcrma_2.58.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL gcrma_2.58.0.zip && rm gcrma_2.58.0.tar.gz gcrma_2.58.0.zip |
| StartedAt: 2020-04-14 19:12:09 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:13:35 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 86.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/gcrma_2.58.0.tar.gz && rm -rf gcrma.buildbin-libdir && mkdir gcrma.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcrma.buildbin-libdir gcrma_2.58.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL gcrma_2.58.0.zip && rm gcrma_2.58.0.tar.gz gcrma_2.58.0.zip
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install for i386
* installing *source* package 'gcrma' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c baseProfile.c -o baseProfile.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c computeAffinities.c -o computeAffinities.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c postmean.c -o postmean.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/gcrma.buildbin-libdir/00LOCK-gcrma/00new/gcrma/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gcrma'
finding HTML links ... done
affinity.spline.coefs html
bg.adjust.affinities html
bg.adjust.gcrma html
bg.parameters.ns html
compute.affinities html
fast.bkg html
gcrma html
gcrma.engine html
gcrma.engine2 html
getCDF html
justGCRMA html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gcrma' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c baseProfile.c -o baseProfile.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c computeAffinities.c -o computeAffinities.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c postmean.c -o postmean.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o gcrma.dll tmp.def baseProfile.o computeAffinities.o postmean.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/gcrma.buildbin-libdir/gcrma/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcrma' as gcrma_2.58.0.zip
* DONE (gcrma)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'gcrma' successfully unpacked and MD5 sums checked