Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:40:54 -0400 (Wed, 15 Apr 2020).
Package 581/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
flowcatchR 1.20.0 Federico Marini
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ WARNINGS ] | OK |
Package: flowcatchR |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowcatchR_1.20.0.tar.gz |
StartedAt: 2020-04-15 02:20:17 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 02:21:33 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 76.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: flowcatchR.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:flowcatchR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings flowcatchR_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/flowcatchR.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘flowcatchR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘flowcatchR’ version ‘1.20.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘flowcatchR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘EBImage’ which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Documented arguments not in \usage in documentation object 'show,Frames-method': ‘...’ Documented arguments not in \usage in documentation object 'show,KinematicsFeatures-method': ‘...’ Documented arguments not in \usage in documentation object 'show,KinematicsFeaturesSet-method': ‘...’ Documented arguments not in \usage in documentation object 'show,LinkedParticleSet-method': ‘...’ Documented arguments not in \usage in documentation object 'show,ParticleSet-method': ‘...’ Documented arguments not in \usage in documentation object 'show,TrajectorySet-method': ‘...’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/Users/biocbuild/bbs-3.10-bioc/meat/flowcatchR.Rcheck/00check.log’ for details.
flowcatchR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowcatchR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘flowcatchR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowcatchR)
flowcatchR.Rcheck/flowcatchR-Ex.timings
name | user | system | elapsed | |
Frames | 0.281 | 0.035 | 0.319 | |
add.contours | 0.002 | 0.001 | 0.002 | |
channel.Frames | 0.189 | 0.002 | 0.191 | |
crop.Frames | 0.195 | 0.010 | 0.206 | |
export.Frames | 0.001 | 0.001 | 0.001 | |
export.particles | 0.001 | 0.001 | 0.002 | |
inspect.Frames | 0.001 | 0.001 | 0.002 | |
kinematics | 0.366 | 0.035 | 0.402 | |
length.Frames | 0.052 | 0.001 | 0.054 | |
link.particles | 0.161 | 0.005 | 0.166 | |
matchTrajToParticles | 0.302 | 0.021 | 0.323 | |
normalizeFrames | 1.412 | 0.353 | 1.769 | |
particles | 0.001 | 0.001 | 0.003 | |
penaltyFunctionGenerator | 0.000 | 0.000 | 0.001 | |
plot.TrajectorySet | 0.277 | 0.016 | 0.296 | |
plot2D.TrajectorySet | 0.370 | 0.038 | 0.409 | |
preprocess.Frames | 0.700 | 0.141 | 0.846 | |
read.Frames | 0 | 0 | 0 | |
read.particles | 0 | 0 | 0 | |
rotate.Frames | 0.187 | 0.060 | 0.251 | |
select.Frames | 0.603 | 0.281 | 0.887 | |
select.particles | 0.039 | 0.002 | 0.041 | |
shinyFlow | 0.000 | 0.000 | 0.001 | |
show-Frames-method | 0.093 | 0.032 | 0.126 | |
show-KinematicsFeatures-method | 0.286 | 0.015 | 0.301 | |
show-KinematicsFeaturesSet-method | 0.455 | 0.040 | 0.497 | |
show-LinkedParticleSet-method | 0.189 | 0.004 | 0.194 | |
show-ParticleSet-method | 0.008 | 0.001 | 0.010 | |
show-TrajectorySet-method | 0.255 | 0.003 | 0.259 | |
snap | 0.001 | 0.000 | 0.001 | |
trajectories | 0.303 | 0.003 | 0.309 | |