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###
### Running command:
###
### rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowWorkspace.buildbin-libdir flowWorkspace_3.34.1.tar.gz
###
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install for i386
* installing *source* package 'flowWorkspace' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_API.cpp -o R_API.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_API.cpp:9:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_API.cpp:9:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from R_GatingHierarchy.cpp:17:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from R_GatingHierarchy.cpp:17:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_GatingSet.cpp -o R_GatingSet.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_GatingSet.cpp:10:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_GatingSet.cpp:10:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from ../inst/include/flowWorkspace.h:5,
from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from ../inst/include/flowWorkspace.h:5,
from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c getDescendants.cpp -o getDescendants.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getDescendants.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getDescendants.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c getPopStats.cpp -o getPopStats.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getPopStats.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getPopStats.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c getSingleCellExpression.cpp -o getSingleCellExpression.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from getSingleCellExpression.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from getSingleCellExpression.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
getSingleCellExpression.cpp: In function 'Rcpp::NumericMatrix getSingleCellExpressionByGate(Rcpp::XPtr<GatingSet>, std::string, Rcpp::List, Rcpp::NumericMatrix, Rcpp::CharacterVector, bool)':
getSingleCellExpression.cpp:73:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(unsigned j = 0; j < pops.size(); ++j){
^
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c setCounts.cpp -o setCounts.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from setCounts.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from setCounts.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
mkdir -p "C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/i386"
C:/Rtools/mingw_32/bin/ar rs "C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/i386/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o getDescendants.o getPopStats.o getSingleCellExpression.o setCounts.o
C:\Rtools\mingw_32\bin\ar.exe: creating C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/lib/i386/libflowWorkspace.a
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o flowWorkspace.dll tmp.def R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o getDescendants.o getPopStats.o getSingleCellExpression.o setCounts.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/lib/i386/GatingSet.pb.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/lib/i386/libprotobuf.a -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/i386 -ltbb -ltbbmalloc -lws2_32 -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/00LOCK-flowWorkspace/00new/flowWorkspace/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowWorkspace'
finding HTML links ... done
GatingHierarchy-class html
GatingSet-class html
GatingSet-methods html
GatingSetList-class html
asinh_Gml2 html
asinhtGml2_trans html
booleanFilter-class html
finding level-2 HTML links ... done
compensate html
compute_timestep html
estimateLogicle.GatingHierarchy html
extract_cluster_pop_name_from_node html
filterObject html
fix_channel_slash html
flowJo_flog html
flowWorkspace-deprecated html
flowWorkspace-package html
flowWorkspace.par.get html
flowWorkspace.par.init html
flow_breaks html
flow_trans html
flowjo_biexp html
flowjo_biexp_trans html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmp4mh5hB/R.INSTALL434442a44f1/flowWorkspace/man/flowjo_biexp_trans.Rd:13: file link 'flowJoTrans' in package 'flowWorkspace' does not exist and so has been treated as a topic
flowjo_fasinh html
flowjo_fasinh_trans html
gh_apply_to_new_fcs html
gh_copy_gate html
gh_get_cluster_labels html
gh_get_compensations html
gh_get_transformations html
gh_pop_compare_stats html
gh_pop_get_cluster_name html
gh_pop_get_descendants html
gh_pop_get_full_path html
gh_pop_get_gate html
gh_pop_get_indices html
gh_pop_get_indices_mat html
gh_pop_get_proportion html
gh_pop_move html
gh_pop_set_indices html
gh_pop_set_xml_count html
gs_check_redundant_nodes html
gs_clone html
gs_cyto_data html
gs_get_compensation_internal html
gs_get_leaf_nodes html
gs_get_pop_paths html
gs_get_singlecell_expression html
gs_is_h5 html
gs_plot_diff_tree html
gs_plot_pop_count_cv html
gs_pop_add html
gs_pop_get_children html
gs_pop_get_count_fast html
gs_pop_get_data html
gs_pop_get_stats html
gs_pop_set_gate html
gs_pop_set_name html
gs_pop_set_visibility html
gs_remove_redundant_channels html
gs_remove_redundant_nodes html
gs_split_by_channels html
gs_split_by_tree html
gs_update_channels html
gslist_to_gs html
keyword html
lapply-methods html
length html
logicleGml2_trans html
logicle_trans html
loglevel html
logtGml2_trans html
markernames html
mkformula html
ncFlowSet-methods html
nodeflags html
openWorkspace html
pData-methods html
plot-methods html
plotGate-methods html
pop_add html
prettyAxis html
recompute html
rotate_gate html
sampleNames html
save_gs html
scale_gate html
shift_gate html
standardize-GatingSet html
stats.fun html
subset html
swap_data_cols html
transform html
transform_gate html
transformerList html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowWorkspace' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_API.cpp -o R_API.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_API.cpp:9:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_API.cpp:9:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from R_GatingHierarchy.cpp:17:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from R_GatingHierarchy.cpp:17:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c R_GatingSet.cpp -o R_GatingSet.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_GatingSet.cpp:10:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from R_GatingSet.cpp:10:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from ../inst/include/flowWorkspace.h:5,
from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from ../inst/include/flowWorkspace.h:5,
from RcppExports.cpp:4:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c getDescendants.cpp -o getDescendants.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getDescendants.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getDescendants.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c getPopStats.cpp -o getPopStats.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getPopStats.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from getPopStats.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c getSingleCellExpression.cpp -o getSingleCellExpression.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from getSingleCellExpression.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from getSingleCellExpression.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -DROUT -DRCPP_PARALLEL_USE_TBB=1 -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/BH/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c setCounts.cpp -o setCounts.o
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/gate.hpp:14:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from setCounts.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp: In member function 'virtual void logTrans::transforming(EVENT_DATA_TYPE*, int)':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/transformation.hpp:697:20: warning: unused variable 'thisMin' [-Wunused-variable]
EVENT_DATA_TYPE thisMin=0;//input.min();
^
In file included from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/nodeProperties.hpp:11:0,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/populationTree.hpp:11,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingHierarchy.hpp:15,
from C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/GatingSet.hpp:12,
from setCounts.cpp:1:
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> BOOLINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:103:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < x.size(); i++){
^
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp: In member function 'virtual std::vector<unsigned int> ROOTINDICES::getIndices_u()':
C:/Users/biocbuild/bbs-3.10-bioc/R/library/cytolib/include/cytolib/POPINDICES.hpp:228:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(auto i = 0; i < nEvents; i++)
^
mkdir -p "C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/lib/x64"
C:/Rtools/mingw_64/bin/ar rs "C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/lib/x64/libflowWorkspace.a" R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o getDescendants.o getPopStats.o getSingleCellExpression.o setCounts.o
C:\Rtools\mingw_64\bin\ar.exe: creating C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/lib/x64/libflowWorkspace.a
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o flowWorkspace.dll tmp.def R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o getDescendants.o getPopStats.o getSingleCellExpression.o setCounts.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/lib/x64/GatingSet.pb.o C:/Users/biocbuild/bbs-3.10-bioc/R/library/RProtoBufLib/lib/x64/libprotobuf.a -LC:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -lws2_32 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowWorkspace' as flowWorkspace_3.34.1.zip
* DONE (flowWorkspace)
