Greg Finak
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/flowStats |
| Branch: RELEASE_3_10 |
| Last Commit: 1260965 |
| Last Changed Date: 2019-10-29 13:08:05 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:49 -0400 (Wed, 15 Apr 2020).
| Package 602/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| flowStats 3.44.0 Greg Finak
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: flowStats |
| Version: 3.44.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowStats_3.44.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_3.44.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowStats_3.44.0.zip && rm flowStats_3.44.0.tar.gz flowStats_3.44.0.zip |
| StartedAt: 2020-04-14 19:43:52 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:44:34 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 42.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/flowStats_3.44.0.tar.gz && rm -rf flowStats.buildbin-libdir && mkdir flowStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowStats.buildbin-libdir flowStats_3.44.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL flowStats_3.44.0.zip && rm flowStats_3.44.0.tar.gz flowStats_3.44.0.zip
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install for i386
* installing *source* package 'flowStats' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowStats'
finding HTML links ... done
BackGating html
ITN html
addName-methods html
autoGate html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/autoGate.Rd:21: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/autoGate.Rd:25: missing file link 'norm2Filter-class'
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/autoGate.Rd:54: missing file link 'norm2Filter-class'
binByRef html
calcPBChiSquare html
calcPearsonChi html
curv1Filter-class html
finding level-2 HTML links ... done
curv2Filter-class html
curvPeaks html
density1d html
fdPar html
flowStats-package html
gate_singlet html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/gate_singlet.Rd:47: file link 'polygonGate' in package 'flowCore' does not exist and so has been treated as a topic
gaussNorm html
gpaSet html
iProcrustes html
idFeaturesByBackgating html
landmarkMatrix html
lymphGate html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:79: missing file link 'norm2Filter-class'
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:83: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:133: file link 'ellipsoidGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/lymphGate.Rd:141: missing file link 'norm2Filter-class'
norm2Filter-class html
normQA html
normalize html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/normalize.Rd:58: file link 'ncdfFlowSet' in package 'ncdfFlow' does not exist and so has been treated as a topic
overton_like html
plotBins html
proBin html
quadrantGate html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/quadrantGate.Rd:71: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/quadrantGate.Rd:79: file link 'quadGate' in package 'flowCore' does not exist and so has been treated as a topic
rangeGate html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/rangeGate.Rd:135: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/rangeGate.Rd:145: file link 'rectangleGate' in package 'flowCore' does not exist and so has been treated as a topic
spillover-flowSet html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpc5Qtrq/R.INSTALLd703ab03360/flowStats/man/spillover-flowSet.Rd:34: file link 'norm2Filter' in package 'flowStats' does not exist and so has been treated as a topic
spillover_match-flowSet html
spillover_ng-flowSet html
warpSet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowStats' as flowStats_3.44.0.zip
* DONE (flowStats)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'flowStats' successfully unpacked and MD5 sums checked