Multiple platform build/check report for BioC 3.10 - CHECK report for fastLiquidAssociation on tokay1

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### Running command:
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###   C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fastLiquidAssociation.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings fastLiquidAssociation_1.22.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/fastLiquidAssociation.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fastLiquidAssociation/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fastLiquidAssociation' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fastLiquidAssociation' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpqoU7ZX/R.INSTALL1be449dd3daf/fastLiquidAssociation/man/fastMLA-methods.Rd:59: missing link 'WGCNA'
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/fastLiquidAssociation.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'impute' 'preprocessCore'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'fastMLA-methods.Rd':
  'WGCNA'

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
fastLiquidAssociation-package 1.22   0.20   37.67
mass.CNM-methods              1.05   0.10   10.71
fastboots.GLA-methods         1.00   0.12   37.42
fastMLA-methods               0.52   0.10   10.28
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                              user system elapsed
fastLiquidAssociation-package 1.45   0.16   39.97
fastboots.GLA-methods         0.87   0.10   38.40
mass.CNM-methods              0.78   0.14   10.19
fastMLA-methods               0.64   0.07    9.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.10-bioc/meat/fastLiquidAssociation.Rcheck/00check.log'
for details.

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###
### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/fastLiquidAssociation_1.22.0.tar.gz && rm -rf fastLiquidAssociation.buildbin-libdir && mkdir fastLiquidAssociation.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fastLiquidAssociation.buildbin-libdir fastLiquidAssociation_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL fastLiquidAssociation_1.22.0.zip && rm fastLiquidAssociation_1.22.0.tar.gz fastLiquidAssociation_1.22.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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100  151k  100  151k    0     0  4450k      0 --:--:-- --:--:-- --:--:-- 5038k

install for i386

* installing *source* package 'fastLiquidAssociation' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fastLiquidAssociation'
    finding HTML links ... done
    fastLiquidAssociation-package           html  
    fastMLA-methods                         html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpqoU7ZX/R.INSTALL1be449dd3daf/fastLiquidAssociation/man/fastMLA-methods.Rd:59: missing link 'WGCNA'
    fastboots.GLA-methods                   html  
    mass.CNM-methods                        html  
    testmat                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fastLiquidAssociation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fastLiquidAssociation' as fastLiquidAssociation_1.22.0.zip
* DONE (fastLiquidAssociation)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'fastLiquidAssociation' successfully unpacked and MD5 sums checked

CHECK report for fastLiquidAssociation on tokay1

Summary

Command output

Installation output

Tests output

Example timings