Package: copa

Version: 1.54.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/copa_1.54.0.tar.gz && rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copa.buildbin-libdir copa_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL copa_1.54.0.zip && rm copa_1.54.0.tar.gz copa_1.54.0.zip

StartedAt: 2020-04-14 18:37:36 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 18:37:56 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 19.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/copa_1.54.0.tar.gz && rm -rf copa.buildbin-libdir && mkdir copa.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copa.buildbin-libdir copa_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL copa_1.54.0.zip && rm copa_1.54.0.tar.gz copa_1.54.0.zip
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install for i386

* installing *source* package 'copa' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c copa.c -o copa.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/copa.buildbin-libdir/00LOCK-copa/00new/copa/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'copa'
    finding HTML links ... done
    copa                                    html  
    copa.package                            html  
    copaFilter                              html  
    copaPerm                                html  
    copaTable                               html  
    getans                                  html  
    pSum                                    html  
    perm.mat                                html  
    plotCopa                                html  
    scatterPlotCopa                         html  
    summaryCopa                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'copa' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c copa.c -o copa.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o copa.dll tmp.def copa.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/copa.buildbin-libdir/copa/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'copa' as copa_1.54.0.zip
* DONE (copa)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'copa' successfully unpacked and MD5 sums checked