Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:38:30 -0400 (Wed, 15 Apr 2020).
Package 294/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
cisPath 1.26.0 Likun Wang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
Package: cisPath |
Version: 1.26.0 |
Command: rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cisPath_1.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cisPath.buildbin-libdir |
StartedAt: 2020-04-15 07:06:40 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 07:07:41 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 60.9 seconds |
RetCode: 0 |
Status: OK |
PackageFile: cisPath_1.26.0.tgz |
PackageFileSize: 1019 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf cisPath.buildbin-libdir && mkdir cisPath.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh cisPath_1.26.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R cisPath.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=cisPath.buildbin-libdir cisPath_1.26.0.tar.gz' >>>>>>> * installing *source* package ‘cisPath’ ... ** using staged installation ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c cisPath.cpp -o cisPath.o cisPath.cpp:945:14: warning: explicitly assigning value of variable of type 'std::__1::string' (aka 'basic_string<char, char_traits<char>, allocator<char> >') to itself [-Wself-assign-overloaded] Name = Name; ~~~~ ^ ~~~~ 1 warning generated. clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o cisPath.so cisPath.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.10-bioc/meat/cisPath.buildbin-libdir/00LOCK-cisPath/00new/cisPath/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cisPath) >>>>>>> >>>>>>> FIXING LINKS FOR cisPath.buildbin-libdir/cisPath/libs//cisPath.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "cisPath.buildbin-libdir/cisPath/libs//cisPath.so"