Karen Y. Orostica
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/chromPlot |
| Branch: RELEASE_3_10 |
| Last Commit: 7e00e31 |
| Last Changed Date: 2019-10-29 13:09:34 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:26:10 -0400 (Wed, 15 Apr 2020).
| Package 286/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| chromPlot 1.14.0 Karen Y. Orostica
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: chromPlot |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:chromPlot.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings chromPlot_1.14.0.tar.gz |
| StartedAt: 2020-04-15 02:02:51 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 02:05:16 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 145.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: chromPlot.Rcheck |
| Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:chromPlot.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings chromPlot_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/chromPlot.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'chromPlot/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'chromPlot' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'chromPlot' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'grDevices::windows' by 'GenomicRanges::windows' when loading 'chromPlot' See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/chromPlot.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/chromPlot.Rcheck/00check.log' for details.
chromPlot.Rcheck/00install.out
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### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/chromPlot_1.14.0.tar.gz && rm -rf chromPlot.buildbin-libdir && mkdir chromPlot.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chromPlot.buildbin-libdir chromPlot_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL chromPlot_1.14.0.zip && rm chromPlot_1.14.0.tar.gz chromPlot_1.14.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 762k 100 762k 0 0 13.6M 0 --:--:-- --:--:-- --:--:-- 14.3M
install for i386
* installing *source* package 'chromPlot' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'grDevices::windows' by 'GenomicRanges::windows' when loading 'chromPlot'
** help
*** installing help indices
converting help for package 'chromPlot'
finding HTML links ... done
chromPlot-package html
chromPlot html
hg_cytoBandIdeo html
hg_gap html
mm10_cytoBandIdeo html
mm10_gap html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'grDevices::windows' by 'GenomicRanges::windows' when loading 'chromPlot'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'grDevices::windows' by 'GenomicRanges::windows' when loading 'chromPlot'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'chromPlot' ...
** testing if installed package can be loaded
Warning: replacing previous import 'grDevices::windows' by 'GenomicRanges::windows' when loading 'chromPlot'
* MD5 sums
packaged installation of 'chromPlot' as chromPlot_1.14.0.zip
* DONE (chromPlot)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'chromPlot' successfully unpacked and MD5 sums checked
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chromPlot.Rcheck/examples_i386/chromPlot-Ex.timings
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chromPlot.Rcheck/examples_x64/chromPlot-Ex.timings
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