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BUILD report for birte on tokay1

This page was generated on 2020-04-15 12:24:25 -0400 (Wed, 15 Apr 2020).

Package 183/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
birte 1.22.0
Holger Froehlich
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/birte
Branch: RELEASE_3_10
Last Commit: cadde5e
Last Changed Date: 2019-10-29 13:09:09 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: birte
Version: 1.22.0
Command: chmod a+r birte -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data birte
StartedAt: 2020-04-14 22:23:31 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 22:24:19 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 48.0 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r birte -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data birte
###
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* checking for file 'birte/DESCRIPTION' ... OK
* preparing 'birte':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'birte.Rnw' using Sweave
Loading required package: RcppArmadillo
Loading required package: Rcpp
Warning: Package 'birte' is deprecated and will be removed from Bioconductor
  version 3.11
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.