Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:19:52 -0400 (Wed, 15 Apr 2020).
Package 5/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
a4Preproc 1.34.0 Tobias Verbeke
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: a4Preproc |
Version: 1.34.0 |
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:a4Preproc.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings a4Preproc_1.34.0.tar.gz |
StartedAt: 2020-04-15 01:09:19 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 01:11:22 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 122.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: a4Preproc.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:a4Preproc.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings a4Preproc_1.34.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/a4Preproc.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'a4Preproc/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'a4Preproc' version '1.34.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'a4Preproc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'methods' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE addGeneInfo: no visible global function definition for 'annotation' addGeneInfo: no visible global function definition for 'featureNames' addGeneInfo: no visible global function definition for 'featureData' addGeneInfo: no visible global function definition for 'pData' addGeneInfo: no visible global function definition for 'pData<-' addGeneInfo: no visible global function definition for 'featureData<-' addGeneInfo: no visible global function definition for 'fvarMetadata' addGeneInfo: no visible global function definition for 'fvarMetadata<-' Undefined global functions or variables: annotation featureData featureData<- featureNames fvarMetadata fvarMetadata<- pData pData<- * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/a4Preproc.Rcheck/00check.log' for details.
a4Preproc.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/a4Preproc_1.34.0.tar.gz && rm -rf a4Preproc.buildbin-libdir && mkdir a4Preproc.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=a4Preproc.buildbin-libdir a4Preproc_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL a4Preproc_1.34.0.zip && rm a4Preproc_1.34.0.tar.gz a4Preproc_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1856 100 1856 0 0 42733 0 --:--:-- --:--:-- --:--:-- 46400 install for i386 * installing *source* package 'a4Preproc' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'a4Preproc' finding HTML links ... done addGeneInfo html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'a4Preproc' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'a4Preproc' as a4Preproc_1.34.0.zip * DONE (a4Preproc) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'a4Preproc' successfully unpacked and MD5 sums checked
a4Preproc.Rcheck/examples_i386/a4Preproc-Ex.timings
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a4Preproc.Rcheck/examples_x64/a4Preproc-Ex.timings
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