Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:24:00 -0400 (Wed, 15 Apr 2020).
Package 1735/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ToPASeq 1.20.0 Ivana Ihnatova
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: ToPASeq |
Version: 1.20.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ToPASeq_1.20.0.tar.gz && rm -rf ToPASeq.buildbin-libdir && mkdir ToPASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ToPASeq.buildbin-libdir ToPASeq_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ToPASeq_1.20.0.zip && rm ToPASeq_1.20.0.tar.gz ToPASeq_1.20.0.zip |
StartedAt: 2020-04-14 19:44:39 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 19:46:09 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 90.2 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ToPASeq_1.20.0.tar.gz && rm -rf ToPASeq.buildbin-libdir && mkdir ToPASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ToPASeq.buildbin-libdir ToPASeq_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ToPASeq_1.20.0.zip && rm ToPASeq_1.20.0.tar.gz ToPASeq_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 48064 100 48064 0 0 612k 0 --:--:-- --:--:-- --:--:-- 642k install for i386 * installing *source* package 'ToPASeq' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c accCpp.cpp -o accCpp.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c betweeness.cpp -o betweeness.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c colMinMax.cpp -o colMinMax.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c downstream.cpp -o downstream.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ToPASeq.dll tmp.def RcppExports.o accCpp.o betweeness.o colMinMax.o downstream.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ToPASeq.buildbin-libdir/00LOCK-ToPASeq/00new/ToPASeq/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ToPASeq' finding HTML links ... done CePa html DEGraph html PRS html finding level-2 HTML links ... done PRS_wrapper html PWEA html SPIA html TAPPA html TopologyGSA html clipper html convertIdentifiersByVector html res html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ToPASeq' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c accCpp.cpp -o accCpp.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c betweeness.cpp -o betweeness.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c colMinMax.cpp -o colMinMax.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c downstream.cpp -o downstream.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ToPASeq.dll tmp.def RcppExports.o accCpp.o betweeness.o colMinMax.o downstream.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/ToPASeq.buildbin-libdir/ToPASeq/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'ToPASeq' as ToPASeq_1.20.0.zip * DONE (ToPASeq) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'ToPASeq' successfully unpacked and MD5 sums checked