Back to Multiple platform build/check report for BioC 3.10
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

BUILD report for TFutils on tokay1

This page was generated on 2020-04-15 12:30:16 -0400 (Wed, 15 Apr 2020).

Package 1720/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TFutils 1.6.0
Shweta Gopaulakrishnan
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/TFutils
Branch: RELEASE_3_10
Last Commit: 7ae9a5f
Last Changed Date: 2019-10-29 13:11:07 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: TFutils
Version: 1.6.0
Command: chmod a+r TFutils -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TFutils
StartedAt: 2020-04-15 00:02:47 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 00:04:50 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 122.7 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r TFutils -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TFutils
###
##############################################################################
##############################################################################


* checking for file 'TFutils/DESCRIPTION' ... OK
* preparing 'TFutils':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'fimo16.Rmd' using rmarkdown
[E::hts_open_format] Failed to open file http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz
Quitting from lines 51-68 (fimo16.Rmd) 
Error: processing vignette 'fimo16.Rmd' failed with diagnostics:
scanTabix: failed to open file: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz
 path: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz
 index: http://s3.amazonaws.com/biocfound-tfbs/M3675_1.02sort.bed.gz.tbi
--- failed re-building 'fimo16.Rmd'

SUMMARY: processing the following file failed:
  'fimo16.Rmd'

Error: Vignette re-building failed.
In addition: Warning message:
In tools::buildVignettes(dir = ".", tangle = TRUE) :
  Files named as vignettes but with no recognized vignette engine:
   'vignettes/TFutils.Rmd'
(Is a VignetteBuilder field missing?)
Execution halted