Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:45:59 -0400 (Wed, 15 Apr 2020).
Package 1716/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
TFARM 1.8.0 Liuba Nausicaa Martino
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: TFARM |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TFARM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TFARM_1.8.0.tar.gz |
StartedAt: 2020-04-15 06:06:54 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 06:09:14 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 139.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: TFARM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:TFARM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings TFARM_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/TFARM.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘TFARM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘TFARM’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘TFARM’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed rulesTF0 6.023 0.058 6.124 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
TFARM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL TFARM ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘TFARM’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFARM)
TFARM.Rcheck/TFARM-Ex.timings
name | user | system | elapsed | |
DELTA | 0.011 | 0.002 | 0.015 | |
IComp | 0.043 | 0.003 | 0.046 | |
IMP | 0.001 | 0.001 | 0.002 | |
IMP_Z | 0.001 | 0.001 | 0.002 | |
IPCA | 0.017 | 0.002 | 0.019 | |
I_c_2 | 0.001 | 0.001 | 0.003 | |
MCF7_chr1 | 0.081 | 0.004 | 0.085 | |
TF_Imp | 0.001 | 0.001 | 0.003 | |
distribViz | 0.018 | 0.002 | 0.021 | |
heatI | 0.073 | 0.006 | 0.081 | |
imp_FOSL2 | 0.002 | 0.001 | 0.003 | |
items | 0.000 | 0.001 | 0.000 | |
itemset | 0.001 | 0.000 | 0.001 | |
p_TFs | 0.002 | 0.001 | 0.002 | |
presAbs | 0.113 | 0.007 | 0.120 | |
r_FOSL2 | 0.001 | 0.001 | 0.003 | |
r_TEAD4 | 0.003 | 0.001 | 0.004 | |
r_noFOSL2 | 0.002 | 0.001 | 0.004 | |
rulesGen | 0.751 | 0.015 | 0.772 | |
rulesTF | 0.533 | 0.003 | 0.538 | |
rulesTF0 | 6.023 | 0.058 | 6.124 | |